PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020701468.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YA
Protein Properties Length: 333aa    MW: 36438 Da    PI: 9.5015
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020701468.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.58.3e-32166221258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      p+YVNaKQy++I++RR++Rak+e ++kl +k rkpylheSRh+hA+rRpRg+gGrF
  XP_020701468.1 166 VPVYVNAKQYNGIVRRRKARAKAEMKSKL-TKIRKPYLHESRHQHAMRRPRGCGGRF 221
                     59***************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MQNMVCFKNT SSVSQTSLGQ PAQTSLAPWW IGSQPLYGEP FSQFKNLSGE HTKGDTSLTC  60
ASGQVHHAVD QRLGSGQQIE EKGNGCGDSA KFQIIPGKGQ KNQPHSTTIS LQSPPDFQGR  120
FELGLGQSVV CSNYPYIDQC YGLFATYGAQ AMHGRMLLPL NMTADVPVYV NAKQYNGIVR  180
RRKARAKAEM KSKLTKIRKP YLHESRHQHA MRRPRGCGGR FLNTKKDANV QTENKPGNPN  240
NGMRPTRLAT SPSSEILQSD SGNPNSASCG SSISRSEVTS MYSQGENDHF HLIEHLRPSL  300
YHPLSSMIVG DHSSVIPSKW GTAADGCCDL LKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.27e-42NF-YA family protein