PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020701444.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family SRS
Protein Properties Length: 329aa    MW: 35064.7 Da    PI: 7.8179
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020701444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702207.34.1e-641072645154
          DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 
                      ++CqdCGnqakkdC+h+RCRtCCksrgfdC+th++stWv+aa+rrer +  a+ s++aa+s  ++  k++r l s++++++s+++ s+++++++
  XP_020701444.1 107 PSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHIRSTWVSAARRRER-HLIASESANAASSPPTSVLKKPRLL-SSHTTTTSHASNSNTTPPRS 199
                     579********************************************9.5566667778888899999999986.77888888899999****** PP

          DUF702 100 letss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     ++t s          lP +v+++avf+cvrv+s+ddge+e+aY++ v+igGhvfkG+Ly+qG +e
  XP_020701444.1 200 FDTGSshqdpsfrenLPGHVRAPAVFKCVRVTSIDDGEDEYAYHAKVNIGGHVFKGFLYNQGFDE 264
                     *999999*******************************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MVGLRDVYVV GPATSFHPAA VAAHHEPFHS SAEAHSVIPR LTAASYLVDD DSSRSSKIQF  60
WQSQPLIASP QPPAPTQNPN PSSTTSYFQK PSSVLESSGI LFVAGGPSTC QDCGNQAKKD  120
CSHRRCRTCC KSRGFDCSTH IRSTWVSAAR RRERHLIASE SANAASSPPT SVLKKPRLLS  180
SHTTTTSHAS NSNTTPPRSF DTGSSHQDPS FRENLPGHVR APAVFKCVRV TSIDDGEDEY  240
AYHAKVNIGG HVFKGFLYNQ GFDEGICTDL TGTSTAADVE NNNVNNTSNA IPNFSELHLG  300
GGGVRNVPHS DMYGLGGLLG GAAFGNAIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.12e-57SRS family protein