PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020701367.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 409aa MW: 45585.9 Da PI: 7.5156

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020701367.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl XP_020701367.1 14 KGLWSPEEDEKLLKHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.1	4.8e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_020701367.1 67 RGTFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*****************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MGRHSCCHKQ KLRKGLWSPE EDEKLLKHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG 120 IDPSTHKSLS EAENPEENKV STSSERNSIL YTGDSLKHTV PQPAPSLMQS VDKNSIAAKE 180 FFIDNSTTCL RSSSNSMACF TVPQLNYGSS TSSLPSNPNP FLCFNQNCRV FDMNPELSCT 240 SISTIGPSIS SSILSNSIDF KSSVDLSSSC LPPSYTGAPV FPYLEVVNPS RCSSGSSSSS 300 SFFDSGLLSW PDLTAEKETQ IHLQGDPEDL KWSEYLQGNF PVSSVLHSQN QPLYGSEANS 360 ESHFGIEGLG LWHQNPQPQH QQHHQQPQQQ ASDLYGKEYQ RISTLFGQI

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MGRHSCCHKQ KLRKGLWSPE EDEKLLKHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPSTHKSLS EAENPEENKV STSSERNSIL YTGDSLKHTV PQPAPSLMQS VDKNSIAAKE  180
FFIDNSTTCL RSSSNSMACF TVPQLNYGSS TSSLPSNPNP FLCFNQNCRV FDMNPELSCT  240
SISTIGPSIS SSILSNSIDF KSSVDLSSSC LPPSYTGAPV FPYLEVVNPS RCSSGSSSSS  300
SFFDSGLLSW PDLTAEKETQ IHLQGDPEDL KWSEYLQGNF PVSSVLHSQN QPLYGSEANS  360
ESHFGIEGLG LWHQNPQPQH QQHHQQPQQQ ASDLYGKEYQ RISTLFGQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	1e-86	MYB family protein