PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020701157.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ZF-HD
Protein Properties Length: 312aa    MW: 34039.7 Da    PI: 8.4002
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020701157.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.66.2e-2898146356
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 
                     +v+Y+eClkNhAaslGg+ +DGCgEfmps      a+ +kCaACgCHR+FHRre
  XP_020701157.1  98 SVKYRECLKNHAASLGGNILDGCGEFMPS-----LADIMKCAACGCHRSFHRRE 146
                     799*************************9.....5678***************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MDFRRQNDDE EDEETVSYNP PTIRDSAFPK PLLPSSSSLI PGRSVATSGV AGVRNGIRSD  60
QTSGSVQNAS QDLFPANEGG KGEGSNFRTA EIAGESSSVK YRECLKNHAA SLGGNILDGC  120
GEFMPSLADI MKCAACGCHR SFHRREGGES DNLFYRHHHH NGSNNSSGSR GAAGGRIPLL  180
LPAPQLTPHQ KHIHTFSSSP SAGMVGLGNT SGGTTTESSS EELGLTMTAV ARGGHMPYVT  240
SSSKKRFRTK FTSEQKARMM NFAERIGWRI QRQDEAEMET FCTEVGVSRQ VFKVWMHNNK  300
HSIRKQQEQQ HP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-44ZF-HD family protein