PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020701120.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

GRF

Protein Properties

Length: 345aa MW: 38534.9 Da PI: 6.8658

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020701120.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.8	5.1e-25	77	120	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e XP_020701120.1 77 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKHVE 120 79****************************************97 PP
2	QLQ	61	3.3e-21	16	51	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+++L++Q+l++KyL+a+ PvPpeLl +i++ XP_020701120.1 16 PFTASQWEELEHQALIFKYLIAGIPVPPELLIPIRR 51 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MNSAPAASLR MDYRPPFTAS QWEELEHQAL IFKYLIAGIP VPPELLIPIR RSYESMAASF 60 SSHSSLSYCS FYGKKPDPEP GRCRRTDGKK WRCSKDAYPD SKYCERHMHR GRNRSRKHVE 120 ISQTVSQSQS LSSMATIPLA ATVGGTSGSG SCSGSLHGLP FGSAAVAGSS QAQIDPASYG 180 ITTKDFRYIN ESKPELDKCS FFSEASRTGR DLSMNSSFDN SWSLMPSSIS SFPVSKERDD 240 SFIQNNYLQL QPMQDLRSVT VRSMHQQNQD SFFGSEFSSL EPTVKIVQPL RAFFDEWPMK 300 RDSWSDLEED ERSNRASFAT TQLSISIPMV SSDFSSTTSL SQNDE

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MNSAPAASLR MDYRPPFTAS QWEELEHQAL IFKYLIAGIP VPPELLIPIR RSYESMAASF  60
SSHSSLSYCS FYGKKPDPEP GRCRRTDGKK WRCSKDAYPD SKYCERHMHR GRNRSRKHVE  120
ISQTVSQSQS LSSMATIPLA ATVGGTSGSG SCSGSLHGLP FGSAAVAGSS QAQIDPASYG  180
ITTKDFRYIN ESKPELDKCS FFSEASRTGR DLSMNSSFDN SWSLMPSSIS SFPVSKERDD  240
SFIQNNYLQL QPMQDLRSVT VRSMHQQNQD SFFGSEFSSL EPTVKIVQPL RAFFDEWPMK  300
RDSWSDLEED ERSNRASFAT TQLSISIPMV SSDFSSTTSL SQNDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-46	GRF family protein