PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020701020.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

LBD

Protein Properties

Length: 190aa MW: 21059.2 Da PI: 8.2132

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020701020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.3	1e-37	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+ +C++ pyf ++p+kfa++hk+FGasnv+k+l ++pe r da++slvyeA+ r++dPvyG++g i lq+++++l+++l XP_020701020.1 42 PCAACKLLRRRCVLECPFFPYFSPNEPQKFAAIHKVFGASNVSKMLMEVPEALRADAANSLVYEANLRLQDPVYGCMGAIIVLQKKVQELETQLR 136 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++kee XP_020701020.1 137 AMKEE 141 99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence
MSHSRKKIED RGKNIIEETD AETVSIATIA NTKQQVLNTS TPCAACKLLR RRCVLECPFF 60 PYFSPNEPQK FAAIHKVFGA SNVSKMLMEV PEALRADAAN SLVYEANLRL QDPVYGCMGA 120 IIVLQKKVQE LETQLRAMKE ELLKHSYGQS SVSSMPSSVA GASAVQWPPL LPEFLSSSSI 180 SMNSQWQNHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	3e-59	LBD family protein