PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020700978.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 509aa MW: 56776.5 Da PI: 7.9812

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020700978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.7	3.7e-31	219	276	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkve++ +++++ei+Y+g+H h XP_020700978.1 219 VEDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPSKKKVEKTL-EGQITEIIYKGKHSHA 276 58**************************************.*************7 PP
2	WRKY	103.2	1.5e-32	373	431	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+Cpv+k++er+++d ++v++ Yeg+Hnh+ XP_020700978.1 373 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAHCPVRKHIERASTDLRAVITAYEGKHNHD 431 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MNSTTPAATF SFSTPSSSNH SFFKASRDHT ISNVHEERPI SLSARPRFST EFNGEVGLAK 60 FKLAPPSPVP ISHSSFFSIP GDISPTELLG SPMLLSSSNI TASQDAENFS SHAFNWRNNS 120 INYMQGIMEE SKSYSDISFQ TSTRPESLQA SSYLPSSMGL VTTSEKHAQG EHQQLWSYNH 180 PAESNSTVIP LSAQQNNHDE SVHISTIMAA QALNDQKGVE DGYNWRKYGQ KQVKGSENPR 240 SYYKCTYPNC PSKKKVEKTL EGQITEIIYK GKHSHAKPKP TRRNSSCFGS DQTFLNSQVL 300 DSITNAENSS ASYGDDDFDM NSMMTKSQGD GFDEDEPDWK KMKNDSENDG FSSSRNIKTP 360 KVVIQTTSDM DVLDDGYRWR KYGQKVVKGN PNPRSYYKCT TAHCPVRKHI ERASTDLRAV 420 ITAYEGKHNH DAPPPRGKGS MISKPLLGNN FYSFNNFTAP TRPMALPTHI SQVANDSFFG 480 SRQNFALDNY GFSRFDNSVG SFYGNQQQQ

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MNSTTPAATF SFSTPSSSNH SFFKASRDHT ISNVHEERPI SLSARPRFST EFNGEVGLAK  60
FKLAPPSPVP ISHSSFFSIP GDISPTELLG SPMLLSSSNI TASQDAENFS SHAFNWRNNS  120
INYMQGIMEE SKSYSDISFQ TSTRPESLQA SSYLPSSMGL VTTSEKHAQG EHQQLWSYNH  180
PAESNSTVIP LSAQQNNHDE SVHISTIMAA QALNDQKGVE DGYNWRKYGQ KQVKGSENPR  240
SYYKCTYPNC PSKKKVEKTL EGQITEIIYK GKHSHAKPKP TRRNSSCFGS DQTFLNSQVL  300
DSITNAENSS ASYGDDDFDM NSMMTKSQGD GFDEDEPDWK KMKNDSENDG FSSSRNIKTP  360
KVVIQTTSDM DVLDDGYRWR KYGQKVVKGN PNPRSYYKCT TAHCPVRKHI ERASTDLRAV  420
ITAYEGKHNH DAPPPRGKGS MISKPLLGNN FYSFNNFTAP TRPMALPTHI SQVANDSFFG  480
SRQNFALDNY GFSRFDNSVG SFYGNQQQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	8e-89	WRKY family protein