PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020700713.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 464aa MW: 51385.2 Da PI: 6.1573

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020700713.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	110.9	6.3e-35	236	290	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+rWtpeLHerFv+av+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+ XP_020700713.1 236 RPRMRWTPELHERFVDAVNQLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYRT 290 59****************************************************8 PP
2	Myb_DNA-binding	59.1	1e-18	238	289	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e++vdav+qlGg t+k + + m g+t +++ks++qky+ XP_020700713.1 238 RMRWTPELHERFVDAVNQLGGSekaTPKGVLKLMKvDGLTIYHVKSHLQKYR 289 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MEAHSAMSAS LSDMKQICSS GVSGVISSSL PTHPSLFAER LLPHSRQVSM DRELRNNSFP 60 QHHTPFVSNN GVVGPLFSSA SGFSSDLHYS SSAPQVRYSN GAPYISQSPS CGIPIPLAQM 120 CSGAFQSSTC NFPSNATGMS WVPGSIHDIL SYPDNLNMEN NQIQSSPINN QIQTTNITAS 180 DDLTKQNEWW DLSSDDWKDL LNDPVGTETQ QKVPLHSGEL CIVNSPSSSM SGAPPRPRMR 240 WTPELHERFV DAVNQLGGSE KATPKGVLKL MKVDGLTIYH VKSHLQKYRT ARYRPDSFEG 300 SSEKRGYPLD ETASLDLKTG RELTEALRLQ MEVQKRLHEQ LEIQRNLQLR IEEQGRYLQM 360 IFEQQYKVGL DKLRPPFDRD EQTTQSCGTT PSPPKSESFE KNRAEKANEP STTKATEEKQ 420 GAEDNKQTVP DTGLTSTVEH IGSIGSESPS HKCVESNAKV FITE

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MEAHSAMSAS LSDMKQICSS GVSGVISSSL PTHPSLFAER LLPHSRQVSM DRELRNNSFP  60
QHHTPFVSNN GVVGPLFSSA SGFSSDLHYS SSAPQVRYSN GAPYISQSPS CGIPIPLAQM  120
CSGAFQSSTC NFPSNATGMS WVPGSIHDIL SYPDNLNMEN NQIQSSPINN QIQTTNITAS  180
DDLTKQNEWW DLSSDDWKDL LNDPVGTETQ QKVPLHSGEL CIVNSPSSSM SGAPPRPRMR  240
WTPELHERFV DAVNQLGGSE KATPKGVLKL MKVDGLTIYH VKSHLQKYRT ARYRPDSFEG  300
SSEKRGYPLD ETASLDLKTG RELTEALRLQ MEVQKRLHEQ LEIQRNLQLR IEEQGRYLQM  360
IFEQQYKVGL DKLRPPFDRD EQTTQSCGTT PSPPKSESFE KNRAEKANEP STTKATEEKQ  420
GAEDNKQTVP DTGLTSTVEH IGSIGSESPS HKCVESNAKV FITE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	1e-67	G2-like family protein