PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020700706.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

GRF

Protein Properties

Length: 592aa MW: 64691.7 Da PI: 7.2264

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020700706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.4	1.2e-23	229	272	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e XP_020700706.1 229 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKRVE 272 79****************************************98 PP
2	QLQ	44.3	5.5e-16	158	194	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+ +L++Q+l+yKy+ a++ +P++Ll+ i++ XP_020700706.1 158 GPFTTSQWLELEHQALIYKYIDAKMSIPSNLLMTIRR 194 59******************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence
MDLGCSLSSD GLVSVYSDPN IRMPSSLFPL ESEPSKQRGL FQSSFSKHGR SIVVEDNDEY 60 WSRLKTARCD TMLTATSKAA ACLLRSGSHT LFPDGEQMLN FSSWKPEALV LNNHWNLPFF 120 NHPSSSSCSS AYPTFRNAGV CSDNSTLNMH GAVSGIRGPF TTSQWLELEH QALIYKYIDA 180 KMSIPSNLLM TIRRSNNQSG FSSFTAGSFR QTGTLGWGNF HPGFSGGADP EPGRCRRTDG 240 KKWRCSRDAV VDQKYCERHM NRGRHRSRKR VEGHLGHAAK AAVPAITSSQ SASAVSSGGS 300 SNNLTTAQQQ SENLQSSGTE PSSLQLDRLL INKDNTGDQR RNSQGLSMMT DLISKSTGTL 360 LPISKQQNPF EETSTRVDLG LISTDSLPNS QGNCSSENLS FVFYNPEMND QHIRSHPFRH 420 FIDDWSKNPS DADVADKMQS YRTELSISIP ISSLGFSSSP CSPIQDKLSF PPFRLSSELD 480 PLNAGSQRGL SWVPISWEPT IGGPLGEVLT NTSTTPKDLG SNLSTSSLNF MTDGWNMRTR 540 FESSPTGVLQ DSGFGSMSSS TGSSPRAENH KAHESDDLLG TTFVNLSVNP SL

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence

MDLGCSLSSD GLVSVYSDPN IRMPSSLFPL ESEPSKQRGL FQSSFSKHGR SIVVEDNDEY  60
WSRLKTARCD TMLTATSKAA ACLLRSGSHT LFPDGEQMLN FSSWKPEALV LNNHWNLPFF  120
NHPSSSSCSS AYPTFRNAGV CSDNSTLNMH GAVSGIRGPF TTSQWLELEH QALIYKYIDA  180
KMSIPSNLLM TIRRSNNQSG FSSFTAGSFR QTGTLGWGNF HPGFSGGADP EPGRCRRTDG  240
KKWRCSRDAV VDQKYCERHM NRGRHRSRKR VEGHLGHAAK AAVPAITSSQ SASAVSSGGS  300
SNNLTTAQQQ SENLQSSGTE PSSLQLDRLL INKDNTGDQR RNSQGLSMMT DLISKSTGTL  360
LPISKQQNPF EETSTRVDLG LISTDSLPNS QGNCSSENLS FVFYNPEMND QHIRSHPFRH  420
FIDDWSKNPS DADVADKMQS YRTELSISIP ISSLGFSSSP CSPIQDKLSF PPFRLSSELD  480
PLNAGSQRGL SWVPISWEPT IGGPLGEVLT NTSTTPKDLG SNLSTSSLNF MTDGWNMRTR  540
FESSPTGVLQ DSGFGSMSSS TGSSPRAENH KAHESDDLLG TTFVNLSVNP SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	4e-59	GRF family protein