PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020700646.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 640aa MW: 69342.9 Da PI: 6.4677

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020700646.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.7	1.6e-14	232	291	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_020700646.1 232 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 291 57*****************666664477446******99***********98 PP
2	AP2	44.9	2.9e-14	334	385	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t e+Aa+a++ a+ k++g XP_020700646.1 334 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEDAAEAYDIAAIKFRG 385 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence
MASINNWLAF SLSPHETLIP SDDASTADCF CISGDSSSEP PLGVSTLRED VPFDILEAVH 60 RTDQQNQDWN IKCLDFKGSP SDLSMVVGTS SNRMNNHMEV EEPKLEDFLG SHSSSEDYVF 120 SDCNDVGSSI GLSMIKTWLR NQPVTQHVGE EKSSGAVVVA GKLGGQNSSQ GLSLSMSMTS 180 QSSSALTLMA TSSERGGGGE SSASPDRVGY GGQSAMEAVT KKSIDTFGQR TSIYRGVTRH 240 RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEDKAAR AYDLAALKYW GPPTTTNFPV 300 SNYDKELEEM KHMTRQEYVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD 360 LYLGTFSTQE DAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SILESSNLPI GGVAKRLKEA 420 SDHSASTING RRPVCAIKSL ASHYSGTISA ASAGIGWPSI SFQQPQPNPL SICYPFALQK 480 GWCKQEQDPF VPAASTATHS MQDLHHLNTH DFFPPTAAMN SFLSMQDFGS ASLEHSTASN 540 SVDCGGFMLP VSINEGSGCF GDEHGKQMEI ENYMGTCTYN SYEQLPAGMV KAANGHELSG 600 GGFSGWGLSA QATMASRAGN VASACHGGPV FSVWNDSYSL

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence

MASINNWLAF SLSPHETLIP SDDASTADCF CISGDSSSEP PLGVSTLRED VPFDILEAVH  60
RTDQQNQDWN IKCLDFKGSP SDLSMVVGTS SNRMNNHMEV EEPKLEDFLG SHSSSEDYVF  120
SDCNDVGSSI GLSMIKTWLR NQPVTQHVGE EKSSGAVVVA GKLGGQNSSQ GLSLSMSMTS  180
QSSSALTLMA TSSERGGGGE SSASPDRVGY GGQSAMEAVT KKSIDTFGQR TSIYRGVTRH  240
RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEDKAAR AYDLAALKYW GPPTTTNFPV  300
SNYDKELEEM KHMTRQEYVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD  360
LYLGTFSTQE DAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SILESSNLPI GGVAKRLKEA  420
SDHSASTING RRPVCAIKSL ASHYSGTISA ASAGIGWPSI SFQQPQPNPL SICYPFALQK  480
GWCKQEQDPF VPAASTATHS MQDLHHLNTH DFFPPTAAMN SFLSMQDFGS ASLEHSTASN  540
SVDCGGFMLP VSINEGSGCF GDEHGKQMEI ENYMGTCTYN SYEQLPAGMV KAANGHELSG  600
GGFSGWGLSA QATMASRAGN VASACHGGPV FSVWNDSYSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-122	AP2 family protein