PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020700324.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 304aa MW: 34518.2 Da PI: 6.5096

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020700324.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.8	3.5e-07	210	250	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A Y+k L XP_020700324.1 210 ARHRRERISERLRVLQRLVPGG-----RKMDTASMLDEAASYLKFL 250 599***************96.....7**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MDCLNCNNFY DNLHEPERTH REVSHKAEIM NEVLPNSLDL QELIWPHEMN ANYKETDQDF 60 FQQQEEIFAS DQLLPLPLIT SRSEDLQLLR NILTFSSTCS NVSSVESDKH PYSFSDQRID 120 SNIKPVTRRC EDSCNPLKSK KAKLDCPKLE SIDFQGEGRE EIDGEAIAQV KEMIYRAAAL 180 RPVSLGVEEI VEKPRRKNLK ISSDPQTTAA RHRRERISER LRVLQRLVPG GRKMDTASML 240 DEAASYLKFL KAQVTALEKN SHGSSPGDMK IVGLNCCSGV LPFPVTLSHY SSPKQKCIFP 300 LPSQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	198	EKPRRKN
2	193	198	KPRRKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	9e-38	bHLH family protein