PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020700267.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 272aa MW: 31125 Da PI: 6.0491

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020700267.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.6e-18	84	137	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k XP_020700267.1 84 KKRRLNMEQVRTLEKNFELGNKLEPERKIQLAMALGLQPRQIAIWFQNRRARWK 137 456899***********************************************9 PP
2	HD-ZIP_I/II	124.4	5.4e-40	83	173	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqv++LE++Fe +kLeperK +la +Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lk +++a+k+en +L++++++L++e+ XP_020700267.1 83 EKKRRLNMEQVRTLEKNFELGNKLEPERKIQLAMALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKLQFEAVKTENVALQAQNKKLQAEI 173 69**************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MASSSFFHPN FIFQMQNSNE EDSLNQHQQS SIINPLLPSS NPQDFSIGMA AMVRKRSVSF 60 SGNFEACEAE EELSDDDCSH PGEKKRRLNM EQVRTLEKNF ELGNKLEPER KIQLAMALGL 120 QPRQIAIWFQ NRRARWKTKQ LEKDYDLLKL QFEAVKTENV ALQAQNKKLQ AEILGLKGRE 180 AAELINLNKE TEGSCSNRTE NSSENSLLNH NPKIELFSSV RPPMISQFLH GSLTPDLNCS 240 KIENGITDEH FSNLLCGMET AFWPWPDHQN HH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	140	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-71	HD-ZIP family protein