PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020700206.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 661aa MW: 74527.6 Da PI: 6.8955

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020700206.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.6	4.8e-23	114	215	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f k+lt sd++++g +++ +++a+e+ +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + +++ XP_020700206.1 114 FSKILTASDTSTHGGFSVLRRHANEClppldMSQPTPTQELSAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGENG 206 889**************************77777888*********************************************..44999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 el+v+v r+ XP_020700206.1 207 ELRVGVKRA 215 99*9886 PP
2	Auxin_resp	100.2	2.9e-33	240	319	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+ s+F+v v+k+++a+++k+s+GmRf m+fe+ed +e+r+ Gt+vgv dl++ +W++SkWr+Lk XP_020700206.1 240 ASHAVTTQTLFTVCYKPRV--SQFIVGVNKYLEAMNNKFSLGMRFMMRFEGEDTPEKRYNGTIVGVGDLSS-QWEGSKWRQLK 319 689*************7..9******************************************777.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MVGDVLYEEL WRACAGPLVE IPRVDERVYY FAQGHMEQLE ASTNQELDQR IPLFNLPSGR 60 SKILCRVLYV ELKAEHETDE VYAQITLLPE ADQNELTTPD PSLPEPKRPV VNSFSKILTA 120 SDTSTHGGFS VLRRHANECL PPLDMSQPTP TQELSAKDLH GYEWRFKHIF RGQPRRHLLT 180 TGWSTFVTSK RLVAGDAFVF LRGENGELRV GVKRASRQHS TIPSSVISSQ SMHLGVLATA 240 SHAVTTQTLF TVCYKPRVSQ FIVGVNKYLE AMNNKFSLGM RFMMRFEGED TPEKRYNGTI 300 VGVGDLSSQW EGSKWRQLKV QWDEQTNILR PDRVSPWEIE PFNPLTSTVS VPQPLSAKSK 360 RPRPSSDFLD PLLPEASSRF WYSASTRTCD LGPLTTPVIW PSKPKADKGS IIIKTPNFHS 420 SDRWLKEHHS SFSSLTSPYN EASLKLFQES AQETKLTVPN IHSIPGHIVE DPNSKVSMAT 480 EKSENCCAYV FGINLGNLIN PSTSSIDKKP EAAAVEQPQV QKTCVEDSDQ LSELSKTSKS 540 SKQVVQVSQK EIQSRTSSAT RTRIKVHMHG VAVGRAVDLM NLGGYEDLIS ELEKMFEISG 600 ELCQREKWEL VFTDDEGDMM LVGDDPWLEF CDMVRKIYIY PSEEVKKLNP RSKLPAHRTI 660 I

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MVGDVLYEEL WRACAGPLVE IPRVDERVYY FAQGHMEQLE ASTNQELDQR IPLFNLPSGR  60
SKILCRVLYV ELKAEHETDE VYAQITLLPE ADQNELTTPD PSLPEPKRPV VNSFSKILTA  120
SDTSTHGGFS VLRRHANECL PPLDMSQPTP TQELSAKDLH GYEWRFKHIF RGQPRRHLLT  180
TGWSTFVTSK RLVAGDAFVF LRGENGELRV GVKRASRQHS TIPSSVISSQ SMHLGVLATA  240
SHAVTTQTLF TVCYKPRVSQ FIVGVNKYLE AMNNKFSLGM RFMMRFEGED TPEKRYNGTI  300
VGVGDLSSQW EGSKWRQLKV QWDEQTNILR PDRVSPWEIE PFNPLTSTVS VPQPLSAKSK  360
RPRPSSDFLD PLLPEASSRF WYSASTRTCD LGPLTTPVIW PSKPKADKGS IIIKTPNFHS  420
SDRWLKEHHS SFSSLTSPYN EASLKLFQES AQETKLTVPN IHSIPGHIVE DPNSKVSMAT  480
EKSENCCAYV FGINLGNLIN PSTSSIDKKP EAAAVEQPQV QKTCVEDSDQ LSELSKTSKS  540
SKQVVQVSQK EIQSRTSSAT RTRIKVHMHG VAVGRAVDLM NLGGYEDLIS ELEKMFEISG  600
ELCQREKWEL VFTDDEGDMM LVGDDPWLEF CDMVRKIYIY PSEEVKKLNP RSKLPAHRTI  660
I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	360	364	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein