PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699908.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 509aa MW: 55510.1 Da PI: 7.0784

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699908.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.3	2.7e-32	221	277	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkg e+prsYY+Ct+++Cpvkkkvers d++v+ei+Y+g+Hnhe XP_020699908.1 221 DDGYNWRKYGQKQVKGCEYPRSYYKCTHPKCPVKKKVERSL-DGQVTEIIYRGQHNHE 277 8**************************************.*************8 PP
2	WRKY	106.1	1.8e-33	389	447	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vkg+++prsYY+Cts+gC+v+k+ver+++dpk+v++tYeg+Hnh+ XP_020699908.1 389 LDDGYRWRKYGQKLVKGNPHPRSYYKCTSTGCNVRKHVERASTDPKAVVTTYEGKHNHD 447 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MSENGGAVSS AAEVNRPSIS LPPRSTVESL FRGGPAEASP GPMTLASSFF EPESEYRSFS 60 QILAGAMVSP SVSTTAFDAR GGGGRERASL NLGHSRPMNL MVAPSPLFTV PPGLSPGGLL 120 DSPAMFSSNL GHLGMSHQHA LAQVTAQASD SHSQMQSQAE FPSSLSSASL IQPISAMNMT 180 SSQPMLFITS GKNIHNTESA FASHSDQRSQ PAAIVADKPA DDGYNWRKYG QKQVKGCEYP 240 RSYYKCTHPK CPVKKKVERS LDGQVTEIIY RGQHNHERPI PNKRSKEGAA EVNGNTYPDN 300 SESLQQDDHL NFNRSSDGMV GLSKKEREGV SEQLSGSSDD EELEDEEAED GEPEHKRRNL 360 ETRVIESSSH RTVTEPRIIL QTTSEVDLLD DGYRWRKYGQ KLVKGNPHPR SYYKCTSTGC 420 NVRKHVERAS TDPKAVVTTY EGKHNHDVPA ARNSSHNTSS SAAATASRSN YSSHDILPSN 480 QNGQGRSDQR NNVYRPVAVL QLKGEHEMT

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MSENGGAVSS AAEVNRPSIS LPPRSTVESL FRGGPAEASP GPMTLASSFF EPESEYRSFS  60
QILAGAMVSP SVSTTAFDAR GGGGRERASL NLGHSRPMNL MVAPSPLFTV PPGLSPGGLL  120
DSPAMFSSNL GHLGMSHQHA LAQVTAQASD SHSQMQSQAE FPSSLSSASL IQPISAMNMT  180
SSQPMLFITS GKNIHNTESA FASHSDQRSQ PAAIVADKPA DDGYNWRKYG QKQVKGCEYP  240
RSYYKCTHPK CPVKKKVERS LDGQVTEIIY RGQHNHERPI PNKRSKEGAA EVNGNTYPDN  300
SESLQQDDHL NFNRSSDGMV GLSKKEREGV SEQLSGSSDD EELEDEEAED GEPEHKRRNL  360
ETRVIESSSH RTVTEPRIIL QTTSEVDLLD DGYRWRKYGQ KLVKGNPHPR SYYKCTSTGC  420
NVRKHVERAS TDPKAVVTTY EGKHNHDVPA ARNSSHNTSS SAAATASRSN YSSHDILPSN  480
QNGQGRSDQR NNVYRPVAVL QLKGEHEMT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13960.1	1e-136	WRKY family protein