PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020699832.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARF
Protein Properties Length: 843aa    MW: 93695.8 Da    PI: 7.0173
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020699832.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.6e-23144245199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      g +++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   +  +
  XP_020699832.1 144 FCKTLTASDTSTHGGFSVLRRHADEClppldmGRQPP-TQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGAN 235
                     99*****************************754544.469************************************************..3489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_020699832.1 236 GELRVGVRRA 245
                     999****996 PP
2Auxin_resp114.78.1e-38270352183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F+v+Y+Pr+s+seF++++ +++++lk++ s+GmRfkm+fe+e+++e+r++Gt+vg+ d+d+  Wp+SkWr+Lk
  XP_020699832.1 270 AWHAISTGTLFTVYYKPRTSPSEFIIPCTQYMESLKNNHSIGMRFKMRFEGEEAPEQRFTGTIVGMGDVDSNCWPGSKWRCLK 352
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MASSEASGKT SGGNGHGDSL SSSCTDRLPT GKETEESLYN ELWHACAGPL VTVPRLGERV  60
FYFPQGHIEQ VEASTNQVAD HQMPVYNLPS KILCRVMNLE LKAELDTDEV YAQITLFPEP  120
NQNEQALEKD PLLSPPAKPH SHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMGRQPP  180
TQELVAKDLH GVEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGANGELRV  240
GVRRAMRQQT NIPSSVISSH SMHLGVLATA WHAISTGTLF TVYYKPRTSP SEFIIPCTQY  300
MESLKNNHSI GMRFKMRFEG EEAPEQRFTG TIVGMGDVDS NCWPGSKWRC LKVRWDENSS  360
VPRPERVSPW QIEPALTPPV NPLPVPRPKR PRVNVIPTSP DSSVLTREGT SKVAADPSLA  420
QGIAMEVQGK DVTSTRKNFS ESNLSESVSK SIIWPASHVE EKHLGSSQKM LGLDSWIQVS  480
MHEPSYTDML SGLQTPDDLH HFGMPYFEHT SADAKILKNC LSSQKCELNW LSGNLSLMPS  540
HAYLNLEGNM STNTTEITNH RNQNDGFYRL EGHPVIHGLG PDHKPHTCFT NHLKTPLAEN  600
LFQACSPKPQ PSKASLIENE RAKESCKLFG VHLNGNLASE PVIPKVNMHQ IQEFLGQPAV  660
GLPQPYLPES DQLSEQSKGG KSIDATLAEK CHQSRPSKDV QSKPSPTAST RSCTKVHKQG  720
IALGRSVDLT RFSSYIELIA ELDKMFDFGG ELKSSNKNWM IVYTDNEGDM MLAGDDPWQE  780
FCSMVRKIYI YTKEEVQKMN PGTLNPVADD KLPSLKDNNM AERESKTSLP TSETTGRSDK  840
TVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein