PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020699782.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 771aa    MW: 83558.2 Da    PI: 5.7981
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020699782.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.34.6e-2293148156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k
  XP_020699782.1  93 KKRYHRHTPQQIQELEALFKECPHPDEKQRMELSKRLNLDPRQVKFWFQNRRTQMK 148
                     688999***********************************************999 PP
2START152.63.4e-482815051205
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++el+k+a+ ++p+W        e +n de+ +++ +  +     + +ea r++g+v  +++ l  +++d+  +W ++++    ka t+
  XP_020699782.1 281 ELALAAMDELIKLAQMDAPFWIPNIdgrgEVLNLDEYSRSLHRCVGpkpaeFVSEATRETGIVLINSMILIDSFMDVT-RWAKMFPcivaKAGTI 374
                     5899********************9888888888888888866444999999**************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwveh 169
                     + issg      galqlm aelq+l+plvp R++ f+R+++q+ +g+w++vdvSvd  ++    s   + +++lpSg+l++ ++ g+skvtwveh
  XP_020699782.1 375 DIISSGmggtrnGALQLMHAELQVLTPLVPvREVSFLRFCKQHAEGVWAVVDVSVDGIRESLAaSGAHMSCRRLPSGFLVQAMPSGYSKVTWVEH 469
                     *********************************************************99987677777899************************ PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                     +++++  +h+l+r+ ++sgl  ga++w+++lqrq e
  XP_020699782.1 470 AEYDETAVHQLFRPPLRSGLGLGARRWLSALQRQAE 505
                     *********************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    
MSFDGLFDSG SSGGLPPYSA GGVQQTRLLS NPAFSSPGLS LGLGEMSRLG VFTGDAETMV  60
KNREDENESR SGGSDNLEGG SGDDIDQENP RKKKRYHRHT PQQIQELEAL FKECPHPDEK  120
QRMELSKRLN LDPRQVKFWF QNRRTQMKTQ IERHENSILR SENDKLRAEN LTIREAMRSP  180
VCGSCGSPAM LGEVSLEEQH LRIENARLKD ELDRVCALAS RFLGRPMSSL SSPFSPAPLD  240
LGVGFTALTA MGGGDNYPSG SSMLQPARAV LAGSERSMLL ELALAAMDEL IKLAQMDAPF  300
WIPNIDGRGE VLNLDEYSRS LHRCVGPKPA EFVSEATRET GIVLINSMIL IDSFMDVTRW  360
AKMFPCIVAK AGTIDIISSG MGGTRNGALQ LMHAELQVLT PLVPVREVSF LRFCKQHAEG  420
VWAVVDVSVD GIRESLAASG AHMSCRRLPS GFLVQAMPSG YSKVTWVEHA EYDETAVHQL  480
FRPPLRSGLG LGARRWLSAL QRQAECLAIM AASSPPPGDN PAAITVAGRR SMLRLAGRMT  540
ENFCAGVCAW AERKWRELRS VEVGEDMVRV MTRQSVDDPG EPPGVVLSAA TSVWLPLVSA  600
QRLFEFLRDE HLRREWDILS NGGPMQEVAH IAKGQDHGNA VSLLRATVPA TSSSMDANGN  660
QKHEDESMLI LQETSTDAAG SLVVYAPVDA PAINLVMNGG DSSYVALLPS GFAILPDGSG  720
GSGSVGGSLL TVAFQILVTT LSTAELTVQS VDTVKSLISC TVLKIKSALT C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0HD-ZIP family protein