PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020699776.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 778aa    MW: 84289 Da    PI: 5.7981
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020699776.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.34.6e-22100155156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k
  XP_020699776.1 100 KKRYHRHTPQQIQELEALFKECPHPDEKQRMELSKRLNLDPRQVKFWFQNRRTQMK 155
                     688999***********************************************999 PP
2START152.53.5e-482885121205
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++el+k+a+ ++p+W        e +n de+ +++ +  +     + +ea r++g+v  +++ l  +++d+  +W ++++    ka t+
  XP_020699776.1 288 ELALAAMDELIKLAQMDAPFWIPNIdgrgEVLNLDEYSRSLHRCVGpkpaeFVSEATRETGIVLINSMILIDSFMDVT-RWAKMFPcivaKAGTI 381
                     5899********************9888888888888888866444999999**************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwveh 169
                     + issg      galqlm aelq+l+plvp R++ f+R+++q+ +g+w++vdvSvd  ++    s   + +++lpSg+l++ ++ g+skvtwveh
  XP_020699776.1 382 DIISSGmggtrnGALQLMHAELQVLTPLVPvREVSFLRFCKQHAEGVWAVVDVSVDGIRESLAaSGAHMSCRRLPSGFLVQAMPSGYSKVTWVEH 476
                     *********************************************************99987677777899************************ PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                     +++++  +h+l+r+ ++sgl  ga++w+++lqrq e
  XP_020699776.1 477 AEYDETAVHQLFRPPLRSGLGLGARRWLSALQRQAE 512
                     *********************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    
MSFDGLFDSG SSGGLPPYSA GGVQQTRLLS NPAFSSPGLS LGLQMNTAGQ GEMSRLGVFT  60
GDAETMVKNR EDENESRSGG SDNLEGGSGD DIDQENPRKK KRYHRHTPQQ IQELEALFKE  120
CPHPDEKQRM ELSKRLNLDP RQVKFWFQNR RTQMKTQIER HENSILRSEN DKLRAENLTI  180
REAMRSPVCG SCGSPAMLGE VSLEEQHLRI ENARLKDELD RVCALASRFL GRPMSSLSSP  240
FSPAPLDLGV GFTALTAMGG GDNYPSGSSM LQPARAVLAG SERSMLLELA LAAMDELIKL  300
AQMDAPFWIP NIDGRGEVLN LDEYSRSLHR CVGPKPAEFV SEATRETGIV LINSMILIDS  360
FMDVTRWAKM FPCIVAKAGT IDIISSGMGG TRNGALQLMH AELQVLTPLV PVREVSFLRF  420
CKQHAEGVWA VVDVSVDGIR ESLAASGAHM SCRRLPSGFL VQAMPSGYSK VTWVEHAEYD  480
ETAVHQLFRP PLRSGLGLGA RRWLSALQRQ AECLAIMAAS SPPPGDNPAA ITVAGRRSML  540
RLAGRMTENF CAGVCAWAER KWRELRSVEV GEDMVRVMTR QSVDDPGEPP GVVLSAATSV  600
WLPLVSAQRL FEFLRDEHLR REWDILSNGG PMQEVAHIAK GQDHGNAVSL LRATVPATSS  660
SMDANGNQKH EDESMLILQE TSTDAAGSLV VYAPVDAPAI NLVMNGGDSS YVALLPSGFA  720
ILPDGSGGSG SVGGSLLTVA FQILVTTLST AELTVQSVDT VKSLISCTVL KIKSALTC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0HD-ZIP family protein