PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699706.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 399aa MW: 45503.6 Da PI: 7.6422

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	84	1.4e-26	185	244	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDg++WrKYGqK++ g+++prsYYrCt++ gC + k+v++++e+ ++++itY g+H++ XP_020699706.1 185 DDGHSWRKYGQKDILGAKHPRSYYRCTHRktqGCAAMKQVQKTDENSSIFDITYLGTHTC 244 8*************************98999***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MLIKSMLCKP IIRCTRNRSL DTRNTRPSNT TAKSTQISLT IIYFSAFKPY IRTLHVRKRK 60 RPHLFKLQRT MMESGTDMMV SELYQIHELA RKLNENLELS HYEICRSLAK EIICAIEKTI 120 CTAKSSSTGE TELAFFNGRE FHVDRLNKEF STDNEPKKSK KRKIMATGTS QVRVSSDPGA 180 DMPPDDGHSW RKYGQKDILG AKHPRSYYRC THRKTQGCAA MKQVQKTDEN SSIFDITYLG 240 THTCFISPQH IASKTSYYNP QQSLLDQQNS LVLHLGFETN LKLKTESSDL NKDPTSSFSF 300 PSTPIEGMNS ENVLFCSSQR TECCYGVNLS SALMSPTSYE SNCFTWPSCE MSSEVDYALT 360 EIISASNSVA DLPVMDVEFM RDYEEMDAEI LFDTSIFFE

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MLIKSMLCKP IIRCTRNRSL DTRNTRPSNT TAKSTQISLT IIYFSAFKPY IRTLHVRKRK  60
RPHLFKLQRT MMESGTDMMV SELYQIHELA RKLNENLELS HYEICRSLAK EIICAIEKTI  120
CTAKSSSTGE TELAFFNGRE FHVDRLNKEF STDNEPKKSK KRKIMATGTS QVRVSSDPGA  180
DMPPDDGHSW RKYGQKDILG AKHPRSYYRC THRKTQGCAA MKQVQKTDEN SSIFDITYLG  240
THTCFISPQH IASKTSYYNP QQSLLDQQNS LVLHLGFETN LKLKTESSDL NKDPTSSFSF  300
PSTPIEGMNS ENVLFCSSQR TECCYGVNLS SALMSPTSYE SNCFTWPSCE MSSEVDYALT  360
EIISASNSVA DLPVMDVEFM RDYEEMDAEI LFDTSIFFE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23810.1	1e-33	WRKY family protein