PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699704.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 311aa MW: 31622.7 Da PI: 10.0286

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699704.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.3	1.2e-08	105	130	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+G++C+FaHg+ XP_020699704.1 105 KTRLCNKFNTPEGCKFGEKCHFAHGE 130 8***********************96 PP
2	zf-CCCH	35.1	2.2e-11	278	302	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC++f + GtC +GdrC+FaHg XP_020699704.1 278 FKTKLCDNFTK-GTCTFGDRCHFAHG 302 69*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MNSFGGARKR GRPHGTIGNG GVPGSKRSKE MDSSQPGLGS KSKPCTKFFS TAGCPFGEGC 60 HFLHYVPGGY NAVANMTGNP GHAPVSRNPV GLPPLSDGPP TPAAKTRLCN KFNTPEGCKF 120 GEKCHFAHGE RELGRSLHSG HEAPIAPSIG GRLGGRYEPP PPAGLGAAAS FGASATAKIS 180 VDASLAGAII GKGGVNTKQV CRLTGAKLSI RDHESDTNLR NIELEGTFDQ IKQATAMVRE 240 LIVNISSSAV PVKTGGLGAA VGGGGGGGGP GHGPGSNFKT KLCDNFTKGT CTFGDRCHFA 300 HGGSELRKAA A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	4e-73	C3H family protein