PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020699490.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARF
Protein Properties Length: 802aa    MW: 88921.9 Da    PI: 6.1645
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020699490.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.6e-23148249199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      +g+++ s++l+ +d++g +W++++i+r++++r++l++GW+ Fv+++gL +gD ++F   + ++
  XP_020699490.1 148 FCKTLTASDTSTHGGFSVLRRHADEClppldmNGQPP-SQELVAYDLHGVEWRFRHIFRGQPKRHLLQSGWSVFVSSKGLVAGDAFIFL--RGEN 239
                     99*****************************855554.469************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_020699490.1 240 GELRVGVRRA 249
                     99*****996 PP
2Auxin_resp107.81.2e-35274356183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t+ +F+v+Y+Pr+s+ +F++++++++++lk++ s+GmRf+m+fe+e+++e+r++Gt+vg+  ld+++W++SkWr+Lk
  XP_020699490.1 274 AWHAVTTGAMFTVYYKPRTSPCNFIIPFDQYMDSLKKEHSIGMRFRMKFEGEEAPEQRCTGTIVGIGSLDSSNWTGSKWRCLK 356
                     79*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    
MASSDASVKL AGSGNGGKDS ISSSCSDLSG QPPAVKEMED ELYNELWYAC AGPLVTVPRT  60
GELVFYFPQG HIEQMEASTN QMVEQQMPIY DLPSKILCRV VNVDLKAERD TDEVFAQITL  120
FPEPNQDEKA VDKEPLPLPP PRSNVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMN  180
GQPPSQELVA YDLHGVEWRF RHIFRGQPKR HLLQSGWSVF VSSKGLVAGD AFIFLRGENG  240
ELRVGVRRAM RQQTNISSSV ISSHSMHLGV LATAWHAVTT GAMFTVYYKP RTSPCNFIIP  300
FDQYMDSLKK EHSIGMRFRM KFEGEEAPEQ RCTGTIVGIG SLDSSNWTGS KWRCLKVRWD  360
ETSSVTRPER VSPWQIEPGV SPPPVRPLPS SKPKRPRANA MPPSTDSSVL TKEGGAFKAN  420
AEPSQTYGIA KKMEGNDAVN LRNNSSGSKI SFEPSSHENE RNQGSVQMLT GCQESDDLSC  480
YGMPYFGHCF DDLTSPKNYF PNQEGEFNLL SNQFSLIPSH SYLNLEANMA TQTTELCCHG  540
HKNDQFCGIG GHTSSWLTHS LPTSGAGNST HTIFSSLQSF NADHNEVSKP KENGNYKLFG  600
FDLNDNPMDS NPIMPHVNTC EEAGLFSEIT ARLPYPHVLD AGPAELPGHS KVRKSMDSAS  660
SLAVREKCLQ SCPQSAIDVQ KKLATGSMRS CTKVHKQGMA LGRSVDLTRF TDYNELFAEL  720
DKMFGFGGEL MVSNQNWMIV YTDNEGDIML VGDDPWQEFC NIVRKIYIYT KEEVQKMNPG  780
TFNPRVEDLS ASSSGFKNQE NR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein