PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020699322.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 134aa MW: 15196 Da PI: 10.3673 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.4 | 5.9e-16 | 16 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+ + r+ fskRrn +lKKA+ELS+L +ae+++i+f +tg+ + + XP_020699322.1 16 KPIKKDEARKLYFSKRRNRLLKKANELSTLYGAEICIIVFFPTGNAFSF 64 67999999***********************************987766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence |
MMNKKQSITR QKIEIKPIKK DEARKLYFSK RRNRLLKKAN ELSTLYGAEI CIIVFFPTGN 60 AFSFVHLSVD VVAHRFLADA LALPLLCKPF IAAAAIKLNE DYAQLNVLLE KENIRHAKLD 120 EALTALQLGA NKPF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-18 | M-type_MADS family protein |