PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020699321.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 241aa MW: 26850.9 Da PI: 8.3624 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70 | 2.1e-22 | 28 | 73 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 krien+ rqv fskRr+g++KKA ELS+LC+ae+ +++fs+ gk XP_020699321.1 28 KRIENEEARQVCFSKRRAGLFKKATELSILCGAEIGIVVFSPAGKP 73 79*****************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MADGDNGLLM MMVRKKRQSM GRQKIAMKRI ENEEARQVCF SKRRAGLFKK ATELSILCGA 60 EIGIVVFSPA GKPFSFGHPS LDYITKRFLG GGGNNNDVEV VGPLCGMFVE GQKLLQLNQE 120 HAGLTEKLEE ARRMRAKLEA GVAAQRGRSG LSCDVEVHEM CVEDLESFQK RLEELRRGVT 180 NRREELEILC IDTKVARGGV PPQLGYGGWY LGGYNGLYLT PAPVGWFYGH DQDMNMGFSV 240 W |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 8e-31 | M-type_MADS family protein |