PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020699320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | LBD | ||||||||
Protein Properties | Length: 247aa MW: 26931.2 Da PI: 6.833 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.1 | 4.4e-36 | 51 | 153 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++Cv+a +f +eq p++f +vhk+FGasnv+kllk +p+ +r+da+ +++yeA+ar+ dPv G+v++il+l++q+ ql++e XP_020699320.1 51 PCGACKFLRRKCVSGCVFAAHFGSEQgaPARFSAVHKVFGASNVSKLLKLVPPAHRHDAVVTVCYEAQARICDPVLGCVATILALHHQVLQLQSE 145 7*********************9998767****************************************************************** PP DUF260 94 lallkeel 101 l+ ++++l XP_020699320.1 146 LSIVQSQL 153 ***99985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MDRLSFNPNE LCDRSRWIDY TMLPSANKQK AKPARARATA AGNSSSSVKA PCGACKFLRR 60 KCVSGCVFAA HFGSEQGAPA RFSAVHKVFG ASNVSKLLKL VPPAHRHDAV VTVCYEAQAR 120 ICDPVLGCVA TILALHHQVL QLQSELSIVQ SQLINSRLAA AEAFHHSQTQ QQLMTVQPAY 180 SNSSVSNNLN FSNFPSSGLD FCDSQSLELL QLSQTIDEDD GEEVEDSTDK HPEAFSDGIF 240 QPKEQSH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 8e-57 | LBD family protein |