PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699305.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

E2F/DP

Protein Properties

Length: 384aa MW: 42765.4 Da PI: 8.9049

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	74.2	1.4e-23	16	81	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++f++l++k + ++v+l+++a +L v +rRRiYDi+NV+e+++++++k+kn++ w+g XP_020699305.1 16 RKQKSLGLLCSNFVSLYNKGDVDTVCLDDAAIKL---GV--ERRRIYDIVNVMESIGVLTRKAKNRYLWIG 81 79***************999********.....****************************98 PP
2	E2F_TDP	72.2	5.6e-23	146	230	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse..........dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL++ltq+f+kll ++++++v+l+++ak L+ + + k+RR+YDi+NVL++lnliek ++k+++rw g XP_020699305.1 146 RKEKSLGQLTQNFVKLLLTTNADMVSLDDAAKLLLGDgqnpaylrnaNA-AKVRRLYDIANVLSSLNLIEKthqsdTRKPAFRWLG 230 79*****************************************9644.79*****************9999*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MAEKSESGSR HHAYSRKQKS LGLLCSNFVS LYNKGDVDTV CLDDAAIKLG VERRRIYDIV 60 NVMESIGVLT RKAKNRYLWI GFKGIPITLE QLKEGTAKEH NISSLESSSA KVSDDEDDDK 120 SLDHNDDYGE GRLCITDTAA KPKCERKEKS LGQLTQNFVK LLLTTNADMV SLDDAAKLLL 180 GDGQNPAYLR NANAAKVRRL YDIANVLSSL NLIEKTHQSD TRKPAFRWLG TKGKCENGVT 240 IALPPVAQKS GKRMFGTELT NVEVKRAKLL SSVDNKSNKT QVLSHDLKEC NKAVQRQLQG 300 SKSFVFGPFN PPKTPKEEVI EQKFENDPDF ESFASSMRPA YHSQALHDLF SHYMEAYNSW 360 FAEIAGGSGN LQQPLKKSVH IGHS

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MAEKSESGSR HHAYSRKQKS LGLLCSNFVS LYNKGDVDTV CLDDAAIKLG VERRRIYDIV  60
NVMESIGVLT RKAKNRYLWI GFKGIPITLE QLKEGTAKEH NISSLESSSA KVSDDEDDDK  120
SLDHNDDYGE GRLCITDTAA KPKCERKEKS LGQLTQNFVK LLLTTNADMV SLDDAAKLLL  180
GDGQNPAYLR NANAAKVRRL YDIANVLSSL NLIEKTHQSD TRKPAFRWLG TKGKCENGVT  240
IALPPVAQKS GKRMFGTELT NVEVKRAKLL SSVDNKSNKT QVLSHDLKEC NKAVQRQLQG  300
SKSFVFGPFN PPKTPKEEVI EQKFENDPDF ESFASSMRPA YHSQALHDLF SHYMEAYNSW  360
FAEIAGGSGN LQQPLKKSVH IGHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	3e-85	E2F/DP family protein