PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699287.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 1185aa MW: 133009 Da PI: 9.0776

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699287.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.7e-07	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W +E e++++a +++G + W++Ia + +R ++++ XP_020699287.1 45 QWGRDELERFYEAYRKHGRD-WRKIAVAVR-NRPPEMV 80 699*************77.******9.9998877 PP

Sequence ? help Back to Top
Protein Sequence Length: 1185 aa Download sequence
MASARKSRNV NKRFSKVIEE LQDKDGGNPG KKMKKRKLSD MLGSQWGRDE LERFYEAYRK 60 HGRDWRKIAV AVRNRPPEMV EALYNMNKAY LSLPEGHATA AGLIAMMTDH YNILEGSDSD 120 QESNDASRTY RKTPKRGRGK FRLMSKGSDG PYTDLPQYQA ASSSYGCLSL LKWKRSGDLF 180 AGSRPRAVGK RTPRIPVPFF LKEDRNRIVS PCKLGLKSEC NTVDDEGAHV AALALAEASQ 240 RGGSPQISRT PSKRCHLTYS PAPSGENKFG DSKFINCRVD DDHLEGSLGS REAENGEFIK 300 EASISETRQK SKKVQRKRSK AVEDEPFDDD REACSGTEEG LNVRKSKDDT EIDISGGRVL 360 RPSKGSKKRS RQLFFGDESS ALDALQTLAD LSLNILLPTS TIESESSIQI KEEIHTADFD 420 EKPNITESLS TNLQREKSNT VERKDKGHSL AVDGVSRKGT KSSKGLASDP KTSDMKQQNS 480 SSSTKVQKRK PKSMIEKTSK SQFESDPQKI EFHKTEILME DEKRSLAKVK RVCQNSMQQK 540 LGKSAKLQER HFTASDLERV VVDPNEAAVT DSPQNEVIIP TKSRNRRKMD LQKALARKES 600 KSSESGVEEH PDKYPFSNRP YELKETLCHC LSSQLLRRWC KFEWFYSAID YPWFAKSEFV 660 EYLNHVRLGH IPRLTRVEWG VIRSSLGKPR RLSSRFLQQE REKLEQYRES VRSHYAEVRA 720 GVTEGLPADL ARPLSVGQRV IACHPRMREV RDGSILTVDR NRCRVQFDRP ELGVEFVMDV 780 DCMPWNPVEN IPEALRRQNL VINKFCSGFS DLRLDEQKEF KTKDSMTFAS TENMEAADCT 840 SHVASYSYPM NTLINQAKAK AAVNEVAVAA QQAMYGQPFT LAQIQAREAD IRALADLSRT 900 LDKKEALLIE LRQMNEEVSS KQKNGDHIKD LENFRKQYAM VLLQLRDVND QVASALLFLR 960 QRNTYERNST LAWNKANETS MQQGSFNPSA LLANDSGSNV VEVIQSSRQK AKTMVDVAVQ 1020 VMHALKDGED AFVRIGEALE LASNRNSGST SAIAAVRHTF ADAAPENAAP HQDHVSSKLE 1080 AANIQAPNLK FQSLTNGTEV HCPSELISSC VATLFMIQRC TERQYPPAEV AQILDSAVAS 1140 LQPCCPQNLP IFREIETCMG IIKNQMLALV PTPSNGMVTS DAPIL

Sequence ? help Back to Top

Protein Sequence Length: 1185 aa Download sequence

MASARKSRNV NKRFSKVIEE LQDKDGGNPG KKMKKRKLSD MLGSQWGRDE LERFYEAYRK  60
HGRDWRKIAV AVRNRPPEMV EALYNMNKAY LSLPEGHATA AGLIAMMTDH YNILEGSDSD  120
QESNDASRTY RKTPKRGRGK FRLMSKGSDG PYTDLPQYQA ASSSYGCLSL LKWKRSGDLF  180
AGSRPRAVGK RTPRIPVPFF LKEDRNRIVS PCKLGLKSEC NTVDDEGAHV AALALAEASQ  240
RGGSPQISRT PSKRCHLTYS PAPSGENKFG DSKFINCRVD DDHLEGSLGS REAENGEFIK  300
EASISETRQK SKKVQRKRSK AVEDEPFDDD REACSGTEEG LNVRKSKDDT EIDISGGRVL  360
RPSKGSKKRS RQLFFGDESS ALDALQTLAD LSLNILLPTS TIESESSIQI KEEIHTADFD  420
EKPNITESLS TNLQREKSNT VERKDKGHSL AVDGVSRKGT KSSKGLASDP KTSDMKQQNS  480
SSSTKVQKRK PKSMIEKTSK SQFESDPQKI EFHKTEILME DEKRSLAKVK RVCQNSMQQK  540
LGKSAKLQER HFTASDLERV VVDPNEAAVT DSPQNEVIIP TKSRNRRKMD LQKALARKES  600
KSSESGVEEH PDKYPFSNRP YELKETLCHC LSSQLLRRWC KFEWFYSAID YPWFAKSEFV  660
EYLNHVRLGH IPRLTRVEWG VIRSSLGKPR RLSSRFLQQE REKLEQYRES VRSHYAEVRA  720
GVTEGLPADL ARPLSVGQRV IACHPRMREV RDGSILTVDR NRCRVQFDRP ELGVEFVMDV  780
DCMPWNPVEN IPEALRRQNL VINKFCSGFS DLRLDEQKEF KTKDSMTFAS TENMEAADCT  840
SHVASYSYPM NTLINQAKAK AAVNEVAVAA QQAMYGQPFT LAQIQAREAD IRALADLSRT  900
LDKKEALLIE LRQMNEEVSS KQKNGDHIKD LENFRKQYAM VLLQLRDVND QVASALLFLR  960
QRNTYERNST LAWNKANETS MQQGSFNPSA LLANDSGSNV VEVIQSSRQK AKTMVDVAVQ  1020
VMHALKDGED AFVRIGEALE LASNRNSGST SAIAAVRHTF ADAAPENAAP HQDHVSSKLE  1080
AANIQAPNLK FQSLTNGTEV HCPSELISSC VATLFMIQRC TERQYPPAEV AQILDSAVAS  1140
LQPCCPQNLP IFREIETCMG IIKNQMLALV PTPSNGMVTS DAPIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	38	KKMKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein