PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020699248.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 263aa    MW: 29077.4 Da    PI: 8.5583
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020699248.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.29.4e-231664149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+i+ +  rqv fskRrng++KKA+ELS+LC+ae+++++fs+ gk + +
  XP_020699248.1 16 KPIKKEEARQVCFSKRRNGLFKKASELSTLCGAEICIVVFSPAGKAFSF 64
                    6899999*************************************97766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MMNKKRSIGR QKIEIKPIKK EEARQVCFSK RRNGLFKKAS ELSTLCGAEI CIVVFSPAGK  60
AFSFGHPSVA AVAHRFLADE PPLPSLCEPF VAAAAIKLNE DYAQLNAFLE KEKMRRAALD  120
EALTAPQLGA DKPFWRNGEV ESMGLEELEE LRGQLMQLRS AVAERANQLL AMQQAYQCLL  180
PQSSGNNSFG DKRLLLASPS GFENRFGYSV DGLTFCSFKT EMKPDIYVQL PSSSLQPFAS  240
ARYGVDHYGP PYYVAGPPYS PLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-25M-type_MADS family protein