PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699143.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 354aa MW: 39663.2 Da PI: 9.5615

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699143.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.9e-06	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_020699143.1 53 YVCEICNQGFQRDQNLQMHRRRH 75 9*********************9 PP
2	zf-C2H2	12.9	0.00033	137	158	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k + +s++k H++t+ XP_020699143.1 137 ACGRCSKAYAVHSDYKAHLKTC 158 6*******************98 PP
3	zf-C2H2	11.3	0.0011	166	184	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ XP_020699143.1 166 DCGRVFSRVESFIEHQDTC 184 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MFTISSSPLP PAQPLSIAET NITKKKRRPA GTPDPDAEVV SLSPRTLLES DRYVCEICNQ 60 GFQRDQNLQM HRRRHKVPWK LLKRESTVEA AAAASKKRVF VCPETSCLHH DPCHALGDLV 120 GIKKHFRRKH SANKQWACGR CSKAYAVHSD YKAHLKTCGT RGHSCDCGRV FSRVESFIEH 180 QDTCSASRRR SEPRTPQQIT SLSRPISSPS PSTDTPPCPP PPPYPKLPFF SPPSRRNFEL 240 QLLAPPSTEL DLSIGPPVPI NEKSASDEAR EQARQQVEMA EKELATARRI RQQARAEFEK 300 ACALRAAAAR QINSILLQIT CHDCQQRLRS KAITADAGEE GEQMYWPNVP QPKI

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MFTISSSPLP PAQPLSIAET NITKKKRRPA GTPDPDAEVV SLSPRTLLES DRYVCEICNQ  60
GFQRDQNLQM HRRRHKVPWK LLKRESTVEA AAAASKKRVF VCPETSCLHH DPCHALGDLV  120
GIKKHFRRKH SANKQWACGR CSKAYAVHSD YKAHLKTCGT RGHSCDCGRV FSRVESFIEH  180
QDTCSASRRR SEPRTPQQIT SLSRPISSPS PSTDTPPCPP PPPYPKLPFF SPPSRRNFEL  240
QLLAPPSTEL DLSIGPPVPI NEKSASDEAR EQARQQVEMA EKELATARRI RQQARAEFEK  300
ACALRAAAAR QINSILLQIT CHDCQQRLRS KAITADAGEE GEQMYWPNVP QPKI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	28	KKKRR
2	24	29	KKKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-107	C2H2 family protein