PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020699118.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 705aa    MW: 78652.5 Da    PI: 6.2597
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020699118.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.4e-201671156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t+ q++eLe+ F+  ++p++++r +L++ lgL+ rqVk+WFqNrR+++k
  XP_020699118.1 16 KKRYHRHTPRQIQELESIFKLYPHPDEKQRMQLSRDLGLEPRQVKFWFQNRRTQMK 71
                    688999***********************************************998 PP
2START156.42.2e-492104302205
                     HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
           START   2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWdetla 77 
                     la + +qel+++a+ +ep W++               e + +                   ++ea+r+sg v+m++  lv  ++d + +W e ++
  XP_020699118.1 210 LAARSMQELIRLAQNDEPIWSRNGsdgrefiN----LEAYER-----LfprpgqqfrsanTHIEASRDSGDVIMNSFALVDMFMDPG-KWMELFP 294
                     67899****************99967643322....222222.....22222345789989**************************.9*99999 PP

                     ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
           START  78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                          a t+ev++sg      gal+lm+ e+  lsp+vp R+f+f+Ry++q ++g wvi d+S+ s++ +    ++++  +lpSg+li+++ ng+
  XP_020699118.1 295 tivsNARTIEVLMSGmdgsrsGALVLMYGEFLGLSPVVPsREFYFLRYCQQIEQGLWVISDISIHSPKVNII--PCIK--RLPSGCLIQDMTNGY 385
                     9999****************************************************************9975..5555..*************** PP

                     EEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 162 skvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqce 205
                     sk++wveh++ +++ p h+l+r lv sg+a+ga++wvatlqr c 
  XP_020699118.1 386 SKIVWVEHMEIEEKNPvHQLYRDLVDSGMAFGAQRWVATLQRMCR 430
                     ******************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    
MDSGEDQDMS ESKGKKKRYH RHTPRQIQEL ESIFKLYPHP DEKQRMQLSR DLGLEPRQVK  60
FWFQNRRTQM KAQHERSDNC VLRSENERIR FENITMIEAL KNIVCQTCGS SQTSEDSYFD  120
EQKLRMENAR LKEELDRVSS ITSRHLGRPL MQLPPIQPLP ASSLDLTVGG YENTEFNPSL  180
DLDLLGIGPP SMPFPFPTIS EIERPVMVDL AARSMQELIR LAQNDEPIWS RNGSDGREFI  240
NLEAYERLFP RPGQQFRSAN THIEASRDSG DVIMNSFALV DMFMDPGKWM ELFPTIVSNA  300
RTIEVLMSGM DGSRSGALVL MYGEFLGLSP VVPSREFYFL RYCQQIEQGL WVISDISIHS  360
PKVNIIPCIK RLPSGCLIQD MTNGYSKIVW VEHMEIEEKN PVHQLYRDLV DSGMAFGAQR  420
WVATLQRMCR RIASLMVTGN SPRDLGGVIP NDDGKRSMMR LSQRMVSNFC STLGSSNGYR  480
WIAPAGVNDS GVRVTVHKCS DSGQANGVFQ PNGVFLSAAT SIWLPYSPES VFSFFRDERS  540
RVQWDVLSHG KAVQEVTRIS NDQHPGNCIS LLRATMNPAN LNDRNMLILQ ESCTDSSGSL  600
VVYASVDLPS MNIAMSGEDS SFIPLLPSGF VILPDGRPGT GTGINAASSS NPLGGSSGTV  660
LTIAFQIMVS SLPSAKLSLE SVTTVNNVIG ATVQQIKSAL RSLEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein