PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699068.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 577aa MW: 64499.1 Da PI: 6.8519

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.7	5e-28	190	247	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+ kg efp sY++Ct+++Cpv+kk+ers +++++ei+Y+g+Hnh+k XP_020699068.1 190 KDGYNWRKYGQKQLKGCEFPCSYHKCTHPNCPVRKKIERSL-QGHITEIIYKGSHNHPK 247 7**************************************.9************85 PP
2	WRKY	98.1	5.8e-31	400	456	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d + v+ tYeg+Hnh+ XP_020699068.1 400 DGYRWRKYGQKVVKGNPNPRSYYKCTNRGCSVRKHVERASDDLNSVICTYEGKHNHD 456 9*******************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MDFEKKKPPI SFEEGGKKMG LDCTSDDSSE LIGFNVQKSC LKGVHNEKMA EMARLNMLKA 60 FVSQSDQENI MFEINSSQNE SKNLISSLPE ESSSYMLLSP GVNLSSMEYL DNFSVSLALP 120 DNNASLQENF ELLEPFGRKE KTHDIAANQK ASHFLDVNGS PPPPPPDDHQ NAEKGVNVEF 180 SSFPESDPTK DGYNWRKYGQ KQLKGCEFPC SYHKCTHPNC PVRKKIERSL QGHITEIIYK 240 GSHNHPKPPP NHRSSFSSSK QLHGPQSVSA DHPGSVANFK GNPSLASSYD GFKGPKWSDG 300 FGGTSSASFT EFNDPSNVLK SSQLELESME SSSCVISIDK EDNEATHSSL SADYNIDQEE 360 MESKRRKQEL CSIGRNTTSR AMRDRRIVVQ IPSDLDIPYD GYRWRKYGQK VVKGNPNPRS 420 YYKCTNRGCS VRKHVERASD DLNSVICTYE GKHNHDVPSA RNINLARYFP SSLAETAAMQ 480 LPGLYTRPEL AQDSFMSLEN CAPICTYGLL GRGKQLEPTT SFSFGFDQSN LASLCPSGSD 540 LMRRFKMPFF PPIHQNMDRQ VSSGNIIPMR EPKNEPM

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MDFEKKKPPI SFEEGGKKMG LDCTSDDSSE LIGFNVQKSC LKGVHNEKMA EMARLNMLKA  60
FVSQSDQENI MFEINSSQNE SKNLISSLPE ESSSYMLLSP GVNLSSMEYL DNFSVSLALP  120
DNNASLQENF ELLEPFGRKE KTHDIAANQK ASHFLDVNGS PPPPPPDDHQ NAEKGVNVEF  180
SSFPESDPTK DGYNWRKYGQ KQLKGCEFPC SYHKCTHPNC PVRKKIERSL QGHITEIIYK  240
GSHNHPKPPP NHRSSFSSSK QLHGPQSVSA DHPGSVANFK GNPSLASSYD GFKGPKWSDG  300
FGGTSSASFT EFNDPSNVLK SSQLELESME SSSCVISIDK EDNEATHSSL SADYNIDQEE  360
MESKRRKQEL CSIGRNTTSR AMRDRRIVVQ IPSDLDIPYD GYRWRKYGQK VVKGNPNPRS  420
YYKCTNRGCS VRKHVERASD DLNSVICTYE GKHNHDVPSA RNINLARYFP SSLAETAAMQ  480
LPGLYTRPEL AQDSFMSLEN CAPICTYGLL GRGKQLEPTT SFSFGFDQSN LASLCPSGSD  540
LMRRFKMPFF PPIHQNMDRQ VSSGNIIPMR EPKNEPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26440.1	2e-80	WRKY family protein