PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699067.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 578aa MW: 64627.2 Da PI: 6.8519

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699067.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.7	5e-28	191	248	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+ kg efp sY++Ct+++Cpv+kk+ers +++++ei+Y+g+Hnh+k XP_020699067.1 191 KDGYNWRKYGQKQLKGCEFPCSYHKCTHPNCPVRKKIERSL-QGHITEIIYKGSHNHPK 248 7**************************************.9************85 PP
2	WRKY	98.1	5.9e-31	401	457	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d + v+ tYeg+Hnh+ XP_020699067.1 401 DGYRWRKYGQKVVKGNPNPRSYYKCTNRGCSVRKHVERASDDLNSVICTYEGKHNHD 457 9*******************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MDFEKKKPPI SFEEGGKKMG LDCTSDDSSE LIGFNVQKSC LKGVHNEKMA EMARLNMLKA 60 FVSQSDQENI MFEINSSQNE SKNLISSLPE ESSSYMLLSP GVNLSSMEYL DNFSVSLQAL 120 PDNNASLQEN FELLEPFGRK EKTHDIAANQ KASHFLDVNG SPPPPPPDDH QNAEKGVNVE 180 FSSFPESDPT KDGYNWRKYG QKQLKGCEFP CSYHKCTHPN CPVRKKIERS LQGHITEIIY 240 KGSHNHPKPP PNHRSSFSSS KQLHGPQSVS ADHPGSVANF KGNPSLASSY DGFKGPKWSD 300 GFGGTSSASF TEFNDPSNVL KSSQLELESM ESSSCVISID KEDNEATHSS LSADYNIDQE 360 EMESKRRKQE LCSIGRNTTS RAMRDRRIVV QIPSDLDIPY DGYRWRKYGQ KVVKGNPNPR 420 SYYKCTNRGC SVRKHVERAS DDLNSVICTY EGKHNHDVPS ARNINLARYF PSSLAETAAM 480 QLPGLYTRPE LAQDSFMSLE NCAPICTYGL LGRGKQLEPT TSFSFGFDQS NLASLCPSGS 540 DLMRRFKMPF FPPIHQNMDR QVSSGNIIPM REPKNEPM

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MDFEKKKPPI SFEEGGKKMG LDCTSDDSSE LIGFNVQKSC LKGVHNEKMA EMARLNMLKA  60
FVSQSDQENI MFEINSSQNE SKNLISSLPE ESSSYMLLSP GVNLSSMEYL DNFSVSLQAL  120
PDNNASLQEN FELLEPFGRK EKTHDIAANQ KASHFLDVNG SPPPPPPDDH QNAEKGVNVE  180
FSSFPESDPT KDGYNWRKYG QKQLKGCEFP CSYHKCTHPN CPVRKKIERS LQGHITEIIY  240
KGSHNHPKPP PNHRSSFSSS KQLHGPQSVS ADHPGSVANF KGNPSLASSY DGFKGPKWSD  300
GFGGTSSASF TEFNDPSNVL KSSQLELESM ESSSCVISID KEDNEATHSS LSADYNIDQE  360
EMESKRRKQE LCSIGRNTTS RAMRDRRIVV QIPSDLDIPY DGYRWRKYGQ KVVKGNPNPR  420
SYYKCTNRGC SVRKHVERAS DDLNSVICTY EGKHNHDVPS ARNINLARYF PSSLAETAAM  480
QLPGLYTRPE LAQDSFMSLE NCAPICTYGL LGRGKQLEPT TSFSFGFDQS NLASLCPSGS  540
DLMRRFKMPF FPPIHQNMDR QVSSGNIIPM REPKNEPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26440.1	1e-80	WRKY family protein