PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020699063.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | NF-YC | ||||||||
Protein Properties | Length: 172aa MW: 19693.2 Da PI: 5.9261 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 171.2 | 1.1e-53 | 46 | 149 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+ fw++q ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+k+diaaa+trtd+fdfl XP_020699063.1 46 QLQIFWADQyreIEQTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKNDIAAAITRTDVFDFL 140 89*****99999*********************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr+e XP_020699063.1 141 VDIVPREEG 149 ******975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence |
MDQQNHSTPQ AMGVAASVTY PAAAAAPYQA AYQHLYHQQQ QQQQQQLQIF WADQYREIEQ 60 TTDFKNHNLP LARIKKIMKA DEDVRMIAAE APVVFARACE MFILELTHRG WAHAEENKRR 120 TLQKNDIAAA ITRTDVFDFL VDIVPREEGR DEAVPRAIPG GPVDPLYYYV PQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 125 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.1 | 2e-63 | NF-YC family protein |