PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020698924.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 850aa    MW: 93116.9 Da    PI: 6.5425
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020698924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.8e-182380457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_020698924.1 23 YVRYTPEQVEALERVYMECPKPSSLRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 80
                    6789****************************************************97 PP
2START152.92.7e-481713792205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S..EEEEEEEECTTEEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla..kaetlevissggalqlm 94 
                     +aee++ e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+ +  W ++++   ++tl    +gg ++l+
  XP_020698924.1 171 IAEETLSEFLSKATGTSVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKARSSWYRDCRclNVATLIPAGNGGNIELI 264
                     68999*****************************************************.8888888888*******6666666666677****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+  l++g++vi+++S++s +  p     +++vRae+l Sg+li+p+++g+s +++v+hvdl++++++++lr+l+
  XP_020698924.1 265 YMQTYAPTTLAAaRDFWTLRYTTGLEDGSLVICERSLTSSTGGPPgppAPNFVRAEMLSSGYLIRPCEGGGSMIHIVDHVDLDAKSVPEVLRPLY 359
                     ****************************************99888899*********************************************** PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s  + + k++ a+l+++++
  XP_020698924.1 360 ESPKIVAHKMTIAALRHLRQ 379
                     ***************99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    
MATAGKDGKS QLHELQQIDA GKYVRYTPEQ VEALERVYME CPKPSSLRRQ QLIRECPILA  60
NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLTALNKL LMEENDRLQK QVSHLVYENG  120
YMRQQLHVAS AATTDNSCES VVTSGQHQQQ HNAKLQHFQR DANNPAGLLA IAEETLSEFL  180
SKATGTSVEW VQMVGMKPGP DSIGIIAVSH NCSGVAARAC GLVSLEPTKV AEILKARSSW  240
YRDCRCLNVA TLIPAGNGGN IELIYMQTYA PTTLAAARDF WTLRYTTGLE DGSLVICERS  300
LTSSTGGPPG PPAPNFVRAE MLSSGYLIRP CEGGGSMIHI VDHVDLDAKS VPEVLRPLYE  360
SPKIVAHKMT IAALRHLRQI AHETSGEVVY SGGRQPAVLR TFSQRLSRGF NDAINGFLDD  420
GWSLMSGDGG DDVTITVNSS PSKLLGSVNS SPLFAFGGGI LCAKASMLLQ NVPSALLVRF  480
LREHRSEWAD YGADAYSTAS LRASSYPILG VRASGSFHGG QVILPLAQTV ENEEFLEVIR  540
LEGHGFSQDD VARDMYLLQL CSGVDENAVG ACSQLVFAPI DESFADDAPL LPSGFRVIPL  600
ESKTEVHAAA RTLDLASALE VGSGGATHPA TEGASNMSNL RSVLTIAFQF TYENHFRENM  660
AAMARQYVRS VVASVQRVAM AISPSRIGSL GSKHLTGSPE GLTLARWISR SYKFHTGADL  720
FRSEPDDEPQ AGDSLLKLLW HYPDAIMCCT VKSSPVFTFA NQAGLDMLET TLIALQDITL  780
EKILDDNGRK VFCTEFSKIM QQGFAYLPGG VCLSSMGRPA SYDQVIVWKV IDEEDTHHCL  840
AFMFLNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.10.0HD-ZIP family protein