PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020698724.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 468aa MW: 50355.7 Da PI: 8.4943 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.9 | 1.1e-10 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f+rtG+C y +rC+++H++ XP_020698724.1 48 GEPDCDYFMRTGICGYAERCRYNHPR 73 5799********************96 PP | |||||||
2 | zf-CCCH | 33.5 | 7.2e-11 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++ +tGtCk+G++Ck++H++ XP_020698724.1 96 QPACQYYIKTGTCKFGSSCKYHHPR 120 689********************96 PP | |||||||
3 | zf-CCCH | 39.4 | 9.9e-13 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G++CkF+H++ XP_020698724.1 141 GEKECSYYMKTGLCKFGSTCKFHHPQ 166 7899********************97 PP | |||||||
4 | zf-CCCH | 40.4 | 4.8e-13 | 298 | 324 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f++rtG Ck+G++Ck++H+p XP_020698724.1 298 PGQPECQFYMRTGDCKFGSSCKYNHPP 324 5789*********************96 PP | |||||||
5 | zf-CCCH | 34.6 | 3.3e-11 | 347 | 370 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 lC+++a+ G Ck+G++CkF H++ XP_020698724.1 347 QLCSYYAQHGVCKFGPTCKFDHPM 370 69********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence |
MDPYGRSPTG DGRRPDPDTG LEESMWRLGL GGRSGSGGAD FSYPERLGEP DCDYFMRTGI 60 CGYAERCRYN HPRDRGVVGG EMFWPGAREY PERVGQPACQ YYIKTGTCKF GSSCKYHHPR 120 QGGGPVQPVS LNYYGYPLRP GEKECSYYMK TGLCKFGSTC KFHHPQPSAS TLPSSAPIFY 180 PTVQPPSVPS AQQYPQVGGW QIGRPSSALT GAYMQSSYGP MVLSPGVVPV PGWSPYLPPL 240 AQAVSPSAQQ SGQAGPSFGP ASQLSPSALA YPGPYSPMSS TIGPSSSSKK DHLFPERPGQ 300 PECQFYMRTG DCKFGSSCKY NHPPDWNTPK TNCILNPIGL PLRPGAQLCS YYAQHGVCKF 360 GPTCKFDHPM GTLSYSPSAS SLVDMPVAPY PIGMSPPTLA PSSSSTELRP EFHHGKDPFL 420 TQTPSDDVHT GSVGPLLAKG RFLPHALLKS SSQMPASTSN ISKMTSSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-132 | C3H family protein |