PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020698371.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 326aa    MW: 37055.3 Da    PI: 5.1066
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020698371.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.2e-142673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l  +    G g+W+ +ar  g+ R++k+c++rw +yl
   XP_020698371.2 26 KGLWSPEEDDKLMTYMMTNGQGCWTDVARNAGLQRCGKSCRLRWINYL 73
                     678*******************************************97 PP
2Myb_DNA-binding49.97.3e-1679122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ eE+el+++++  lG++ W+ Ia++++ gRt++++k++w++
   XP_020698371.2  79 RGAFSIEEEELIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 122
                      899*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MRRPDTANST TPSSKNGVTV HNKLRKGLWS PEEDDKLMTY MMTNGQGCWT DVARNAGLQR  60
CGKSCRLRWI NYLRPDLKRG AFSIEEEELI IHLHSILGNR WSQIAARLPG RTDNEIKNFW  120
NSTIKKRLKN SSKLSSSTHD QADPSDANKE LLMEDIMFMR LNSSSSSSSS SMQAFTMNTN  180
YNLVPFPDTI SNDCFLNNIS SSLAHDHCMY DDADAHGIIT MGEGLMVEEG YDHYFVPPLE  240
SASQEENGTN LDYAYQNYSR NINEINSNMI NLNVHHDTKN IIKGSNLVGS HEMWEEGHEK  300
MKVGEWSLED LIEDVSSFPL LDFQVE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.12e-58MYB family protein