PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020698345.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 461aa    MW: 49739.5 Da    PI: 6.1422
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020698345.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS319.57e-98774372374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAe ++ ++l+ a +lL ++s l+sp g++ +R+aayf+ AL+ar+++s  ++y+ l+ ++ + + + +   ++++++ +sP+lkfsh+
  XP_020698345.1  77 LTLLLHCAESIALDNLSYAVTLLPEISSLSSPFGSSPERVAAYFADALHARILSSFLGTYSPLSLKPLTLTLTRRISRSFQFLNSISPLLKFSHF 171
                     579*****************************************************************9989999999***************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     t NqaI +a+++++rvHi+Dfdi++GlQWp L++ L+sR+++  s+RiTg+g+     +e l +tg+ La+fA+ +++pf+f+++  k  +  +l
  XP_020698345.1 172 TSNQAIFQALASHDRVHILDFDIMHGLQWPGLFHMLSSRARPIQSIRITGIGP----AAEILDSTGRSLADFAAGFRIPFDFTPIEGKIGDLTDL 262
                     *****************************************************....99*************************86666666688 PP

            GRAS 192 eeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                       +r +   Ea+++++    h l+d ++s         +++ks++P++v+vveq++   +++Fl rf+eal+yysalfd++  + +   eer  v
  XP_020698345.1 263 TPFRPSDpSEAIVIHWTQ--HCLYDITGSDLA----AAQILKSIRPRIVTVVEQDLVQ-GGDFLCRFVEALHYYSALFDAIGDG-GGGGEERWEV 349
                     88876556********98..666655555555....67799**************987.789*******************877.6888****** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er +lg ei+n+va  g +r+ + + +ekW + l+++GF+pv+l  + a+qa+lll  v+++gy++ ee g l lgWkd +L+++SaWr
  XP_020698345.1 350 ERGVLGGEIRNIVAIGGPKRTGEVR-VEKWGDELRRVGFRPVSLAGSPAAQASLLLGIVPWKGYTLVEEGGRLKLGWKDLSLLTASAWR 437
                     *******************998887.9*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    
MLQSLLPRSS INANSTSDAA PAITMKPSKR SSPSSNSDEL PAGKKPHYSP LAEACATSSS  60
TSTSSSPEQE SRILRLLTLL LHCAESIALD NLSYAVTLLP EISSLSSPFG SSPERVAAYF  120
ADALHARILS SFLGTYSPLS LKPLTLTLTR RISRSFQFLN SISPLLKFSH FTSNQAIFQA  180
LASHDRVHIL DFDIMHGLQW PGLFHMLSSR ARPIQSIRIT GIGPAAEILD STGRSLADFA  240
AGFRIPFDFT PIEGKIGDLT DLTPFRPSDP SEAIVIHWTQ HCLYDITGSD LAAAQILKSI  300
RPRIVTVVEQ DLVQGGDFLC RFVEALHYYS ALFDAIGDGG GGGEERWEVE RGVLGGEIRN  360
IVAIGGPKRT GEVRVEKWGD ELRRVGFRPV SLAGSPAAQA SLLLGIVPWK GYTLVEEGGR  420
LKLGWKDLSL LTASAWRPAA VAGEAEGGEG EEMDTSDSLV I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-126GRAS family protein