PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020698338.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YA
Protein Properties Length: 302aa    MW: 33420.5 Da    PI: 9.6742
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020698338.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.31.1e-32138194158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekk+  ksrkpylheSRh hA+rR+Rg+gGrF
  XP_020698338.1 138 EEPVYVNAKQYHGILRRRQSRAKAELEKKT-VKSRKPYLHESRHLHAMRRARGCGGRF 194
                     69***************************9.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MEIRPNGGNS GEYNSHGNLS PVFTSQLWWQ GGDSNIGQLK QKDSSSGKSD ATKDIPNGNS  60
PQEQQQMQPI SALLPPMMPE YIMPHTQLEL GQSVACAAYS FSDPYHGMMA AYVPQALVHP  120
QFLGMPHARM PLPLEMAEEP VYVNAKQYHG ILRRRQSRAK AELEKKTVKS RKPYLHESRH  180
LHAMRRARGC GGRFLNTKKN EADSSNSNPE TGLASASVSF GYESLLSDTS ANPDSARARP  240
ALQSVLKPHK YTSNSDGYQH SSGFQLSPFH PKQGERMDEG DFSGQRRADL MANQPKKRAL  300
AI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.21e-44NF-YA family protein