PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698315.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 713aa MW: 82373.4 Da PI: 8.1574

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698315.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.6	5.9e-25	72	161	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y +YA++vGF vr++ks++s++++++++r+fvC++eg+++++ + k++r+r +tr gC a+++v ++++gkw vtkle+eH+H + XP_020698315.1 72 EYYIAYANHVGFGVRMNKSRRSRKDDTVIMRRFVCTREGFHSKRVIYdDGKKKRKRGTTREGCMAMIEVIRKDHGKWLVTKLETEHTHMV 161 59**************************************9987647889999*******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence
MEVTLTDDYS LLRDSAMDLN DNSTDPPMVL ALDALGDELN GSIPAPLILV DSNGIVEPAI 60 GMEFDSDEAA KEYYIAYANH VGFGVRMNKS RRSRKDDTVI MRRFVCTREG FHSKRVIYDD 120 GKKKRKRGTT REGCMAMIEV IRKDHGKWLV TKLETEHTHM VALPDKVRPC ADRSMISPKS 180 ALIPSEPNGF NNLKNFNRGI RVNPFGEGGE AQCLLEYLKR MQADNPAFFY AIQVDNNNCL 240 TNVFWADSKS RMAYQCFGDA VTFDTTYKKT KYMMPFATFR GINHHLQSVT FGCALLMDET 300 KGSYVWLFET WLAAMGGHHP LSLFTDRDKA MEGAISRVFP RTRHCFCKWH ILSRCKQKLC 360 DVYMKYPALR RELKDCINDS ETMEEFETRW EYILDKYNLW DNAWLQSLYE IRPLWASIYQ 420 TDLFFPELSP SQRPESLNKF FKRNFNTKTS LLLFISKFDQ AMSSQYEREA QEDLATVYSK 480 PLLKTPSPIE RQAVDIYTNA VFEKFQEEFV ESLGYHVDKR EHGPISKYNV MKEDDNHKGY 540 IVSFNDSDQK ASCSCCKFER CGILCRHVLR VFFVVGVRVL PEAYVLKRWT RNVLSNVVLE 600 ERVTEVGLSF QEYLVAWYND LCLDAVKFGM EGALSSETYK VAKLALQKSF AEVIAAKNNQ 660 KKGQQNLQRF ARLQKMQYKV PLPKLQPKKA LLPRLTQQDE DGRSKRNAED DVL

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence

MEVTLTDDYS LLRDSAMDLN DNSTDPPMVL ALDALGDELN GSIPAPLILV DSNGIVEPAI  60
GMEFDSDEAA KEYYIAYANH VGFGVRMNKS RRSRKDDTVI MRRFVCTREG FHSKRVIYDD  120
GKKKRKRGTT REGCMAMIEV IRKDHGKWLV TKLETEHTHM VALPDKVRPC ADRSMISPKS  180
ALIPSEPNGF NNLKNFNRGI RVNPFGEGGE AQCLLEYLKR MQADNPAFFY AIQVDNNNCL  240
TNVFWADSKS RMAYQCFGDA VTFDTTYKKT KYMMPFATFR GINHHLQSVT FGCALLMDET  300
KGSYVWLFET WLAAMGGHHP LSLFTDRDKA MEGAISRVFP RTRHCFCKWH ILSRCKQKLC  360
DVYMKYPALR RELKDCINDS ETMEEFETRW EYILDKYNLW DNAWLQSLYE IRPLWASIYQ  420
TDLFFPELSP SQRPESLNKF FKRNFNTKTS LLLFISKFDQ AMSSQYEREA QEDLATVYSK  480
PLLKTPSPIE RQAVDIYTNA VFEKFQEEFV ESLGYHVDKR EHGPISKYNV MKEDDNHKGY  540
IVSFNDSDQK ASCSCCKFER CGILCRHVLR VFFVVGVRVL PEAYVLKRWT RNVLSNVVLE  600
ERVTEVGLSF QEYLVAWYND LCLDAVKFGM EGALSSETYK VAKLALQKSF AEVIAAKNNQ  660
KKGQQNLQRF ARLQKMQYKV PLPKLQPKKA LLPRLTQQDE DGRSKRNAED DVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	126	RRSRKDDTVIMRRFVCTREGFHSKRVIYDDGKKKRK
2	122	147	KKKRKRGTTREGCMAMIEVIRKDHGK
3	123	148	KKKRKRGTTREGCMAMIEVIRKDHGK
4	124	149	KKKRKRGTTREGCMAMIEVIRKDHGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-154	FAR1 family protein