PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698121.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 321aa MW: 36812.5 Da PI: 8.5623

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698121.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.6	1.7e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G gtW+t ++ g+ R++k+c++rw +yl XP_020698121.1 14 KGPWTPEEDQKLIDYIQKHGHGTWRTLPKNAGLARCGKSCRLRWANYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.8	4.5e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W+++a++++ gRt++++k++w+++ XP_020698121.1 67 RGRFSFEEEETIIQLHSVLGNK-WSAVAAHLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MGRVPCCDKN GLKKGPWTPE EDQKLIDYIQ KHGHGTWRTL PKNAGLARCG KSCRLRWANY 60 LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AVAAHLPGRT DNEIKNYWNT HIKKRLLRSG 120 IDPVTHRPRL DLLNLSSLLN TVLFNQPARL DALRLLDIKP QLNTHELLRI AINLMHQKQN 180 LFKHNQVQES QPNYYQTISQ QLPSSLLYNP AQFINASPWQ YNEVNSFNLS ENLMAANSKA 240 NNGNMEQPMS SLLYEASNGE FSCEQNLYNN LDTKLSRPVP SMTSNNSSTT INNSKEDEKD 300 SYCSNLFDFH TPDLLDASQF I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-94	MYB family protein