PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020698104.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 312aa    MW: 35750.2 Da    PI: 7.7762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020698104.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.6e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d+++++G gtW+t ++  g+ R++k+c++rw +yl
   XP_020698104.1 14 KGPWTPEEDQKLIDYIQKHGHGTWRTLPKNAGLARCGKSCRLRWANYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.36.2e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eE+e +++++  lG++ W+++a++++ gRt++++k++w+++
   XP_020698104.1  67 RGKFSSEEEETIIQLHSVLGNK-WSAVAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MGRVPCCDKN GLKKGPWTPE EDQKLIDYIQ KHGHGTWRTL PKNAGLARCG KSCRLRWANY  60
LRPDIKRGKF SSEEEETIIQ LHSVLGNKWS AVAARLPGRT DNEIKNYWNT HIRKRLLRSG  120
IDPVTHRPRL DLLNLSSLLN TVLFNQSTQL EASRFLDIKA QLNTHELLNI AINLLQSQCQ  180
KQNLFKYNQV QESSLPYNPT QFMNASQWQY NEASSCSLSE NLGTVNNDLI RYQNMEQPKP  240
SLLYDAFNAK LINSDQNLYN NLDSVLSTPV SSVTLNNSST NINNSTEDEK DSYCSNFFDF  300
QIPDLLDMSE FI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-92MYB family protein