PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020698047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | NF-YC | ||||||||
Protein Properties | Length: 162aa MW: 17562.8 Da PI: 9.9776 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 33.6 | 8.3e-11 | 60 | 145 | 19 | 99 |
NF-YC 19 helPlarikkilkadedvk.....misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++P++r+ ++++ + v + +a+a ++ ka e+f+ lt ++ a++ +++ + s ++++v++++ ++fl d p++ XP_020698047.1 60 CSFPMSRVWRLVRGECGVAaaaeiRTTADAVFIINKASEMFLKRLTEDAYTFAKSENKKYISYSHLSSTVNQAKRYEFLSDFAPEK 145 579********9999888622222357999***************************************************99975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence |
MKKSASSPKE RKRKEAEGSG GMDDAETPTK KKKSSKSLDS GGSSSSSPPA TALASDGAFC 60 SFPMSRVWRL VRGECGVAAA AEIRTTADAV FIINKASEMF LKRLTEDAYT FAKSENKKYI 120 SYSHLSSTVN QAKRYEFLSD FAPEKIRAED ALKSRSLIEA GT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 33 | RKRKEAEGSGGMDDAETPTKKKK |
2 | 12 | 34 | RKRKEAEGSGGMDDAETPTKKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-23 | NF-YC family protein |