PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697970.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 452aa MW: 50877.9 Da PI: 9.8725

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.1	2e-08	338	386	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E ++lv++v ++G g+W+ I + +Rt ++k++w+++l XP_020697970.1 338 AWTLGEVLKLVEGVSRYGAGRWSQIRQVAFasgSHRTSVDLKDKWRNLL 386 7**********************99998999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MFKMDVDGPS FGQPNISDTL AKNQSTEACS EIRKNAVNEA AEGSFSKKFS SLKPDFSLLE 60 GEICLDNFSI RELQEAFRAT FGRYTSVKDK LWLKRRIAMG LTNSCNIPSA NFIIKDNKIV 120 LCNVQEETTS RTQRNMSYPG YIMMNNSTDP LNETLQRTLN DTSSGIVEQK ASFTKALDKS 180 LEKCNVENLN TQMEQCGAKR IRRPTKRYIE EHTEVEVMAY SGRVASLGKT AMHDQHCLKS 240 KVRTPCLVDT SQDLLGGYDA RIPSVLRVRR RPPRKNFLTL VNFVHTEREK MNPEVLNSEQ 300 SPHQKHEKFI SSVGAAFHEK SDTVHPVEAS VKRKHHRAWT LGEVLKLVEG VSRYGAGRWS 360 QIRQVAFASG SHRTSVDLKD KWRNLLKASF AQVPTDKGIG NSRKPASLPI PTPILLRVRE 420 LADKRSDSEI EFGSSQFVGH GGIVQEKETG FL

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MFKMDVDGPS FGQPNISDTL AKNQSTEACS EIRKNAVNEA AEGSFSKKFS SLKPDFSLLE  60
GEICLDNFSI RELQEAFRAT FGRYTSVKDK LWLKRRIAMG LTNSCNIPSA NFIIKDNKIV  120
LCNVQEETTS RTQRNMSYPG YIMMNNSTDP LNETLQRTLN DTSSGIVEQK ASFTKALDKS  180
LEKCNVENLN TQMEQCGAKR IRRPTKRYIE EHTEVEVMAY SGRVASLGKT AMHDQHCLKS  240
KVRTPCLVDT SQDLLGGYDA RIPSVLRVRR RPPRKNFLTL VNFVHTEREK MNPEVLNSEQ  300
SPHQKHEKFI SSVGAAFHEK SDTVHPVEAS VKRKHHRAWT LGEVLKLVEG VSRYGAGRWS  360
QIRQVAFASG SHRTSVDLKD KWRNLLKASF AQVPTDKGIG NSRKPASLPI PTPILLRVRE  420
LADKRSDSEI EFGSSQFVGH GGIVQEKETG FL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17460.1	3e-56	MYB_related family protein