PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020697908.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 30004.7 Da PI: 7.9738 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed ll ++++ +G g+W++ ++ g+ R++k+c++rw +yl XP_020697908.1 14 RGPWTSREDALLTNYIQNHGEGNWRSLPKLAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.4e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_020697908.1 67 RGNIGPEEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112 677889****************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MGRSPCCSKV GIHRGPWTSR EDALLTNYIQ NHGEGNWRSL PKLAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI GPEEEDLIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKKLKKQG 120 LVIREATPRP KQSKSSSNSQ KQGVHISNQT EMIRGNNENK IYAPKPTRLT ARVHVMENSS 180 EEEKGSSDEM ELSANNYWSD GGEYGFLDTD NQFNFDLGLD QFLPVQEDSV MLERLYDEYS 240 QLLQSEVNDI NLFSYDQSLM V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-64 | MYB family protein |