PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697869.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 299aa MW: 32557.7 Da PI: 7.5043

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697869.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.8e-05	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++sFs+ L H+r+H XP_020697869.1 4 HVCKLCDRSFSNGRALGGHMRSH 26 79********************9 PP
2	zf-C2H2	12.2	0.00056	175	197	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H XP_020697869.1 175 FQCGTCKKVFRSYQALGGHRASH 197 89**********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MERHVCKLCD RSFSNGRALG GHMRSHVVAV AAAAAASVKS LLSDYSSSST SSREAEEAKG 60 LGYGLRENPK KSFRMVDPEF SSSVVQDRES ETESSPITIN RRRKKRPAPE LPETELLSSV 120 SDTTPEEDVA ISLMLLSRDV WSKDEEVNKA DERVEEMMMI DLKPRSLQAK GRSRFQCGTC 180 KKVFRSYQAL GGHRASHKKS RSCVPPIHVE GSTEANADAD GKSVHVCPIC FREFGCGQAL 240 GGHKRSHLSS STTAITITSQ PRPAKLSESL FDLNLPAPLE DAAELSAVSE AEFMTSGLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	106	RRRKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-47	C2H2 family protein