PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020697763.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family BBR-BPC
Protein Properties Length: 348aa    MW: 38657 Da    PI: 10.0852
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020697763.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind379.36.5e-11613481301
       GAGA_bind   1 mdddgsre..rnkg.yye........paaslke.nlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83 
                     mdd+g+re  r+k+ +y+        p++++k+ + ++++m+++aerd++i+ern+al+ekkaa+aerdma lqrd+ +aern a++erdn+l+a
  XP_020697763.1   1 MDDNGHREngRHKAdHYKavhaqwmmPQHQMKDgHNTMKVMAIMAERDNAIQERNIALAEKKAALAERDMAILQRDAVIAERNSAVIERDNALAA 95 
                     9*****9999****9999******99666888637889********************************************************* PP

       GAGA_bind  84 lllvensla.....salpvgvqvlsgtksidslqq.lse..pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk 169
                     l+++++++      sa+p+g+++ +gtk+ +++qq l++  pql+ds++   re++ +ea+pi++a++ + + +k k++++ +kp++ + +kk  
  XP_020697763.1  96 LEYARENSLngdngSACPPGCSAPRGTKHFHQHQQhLQHppPQLSDSPYIhGREMQLTEAYPISTAPDGIVKIRKAKRSRKDTKPQAANPTKKAS 190
                     **9887776799999******************995566999******99899*******************99999888888887776665544 PP

       GAGA_bind 170 ksekskkkvkkesader............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCt 236
                     ++   k+ + +e  +++                            +++e+k +dl+ln v++Dest+P+P+CsCtG+l+qCYkWG+GGWqSaCCt
  XP_020697763.1 191 RK--GKRVTGAEDLNKQitvvkplnqwrgsvigggedlnkqaivtKHHEWKGQDLGLNLVTFDESTMPPPACSCTGKLQQCYKWGSGGWQSACCT 283
                     32..222233333222246788999*******************9999*********************************************** PP

       GAGA_bind 237 ttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     tt+S+yPLPv++++r+aR+agrKmS++af+klL++LaaeG+dls p+DLkdhWAkHGtn+++ti+
  XP_020697763.1 284 TTLSMYPLPVMPNKRHARVAGRKMSGSAFTKLLSRLAAEGHDLSSPLDLKDHWAKHGTNRYITIK 348
                     ****************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MDDNGHRENG RHKADHYKAV HAQWMMPQHQ MKDGHNTMKV MAIMAERDNA IQERNIALAE  60
KKAALAERDM AILQRDAVIA ERNSAVIERD NALAALEYAR ENSLNGDNGS ACPPGCSAPR  120
GTKHFHQHQQ HLQHPPPQLS DSPYIHGREM QLTEAYPIST APDGIVKIRK AKRSRKDTKP  180
QAANPTKKAS RKGKRVTGAE DLNKQITVVK PLNQWRGSVI GGGEDLNKQA IVTKHHEWKG  240
QDLGLNLVTF DESTMPPPAC SCTGKLQQCY KWGSGGWQSA CCTTTLSMYP LPVMPNKRHA  300
RVAGRKMSGS AFTKLLSRLA AEGHDLSSPL DLKDHWAKHG TNRYITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-114BBR-BPC family protein