PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020697713.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 207aa MW: 24065.8 Da PI: 9.1779 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.9 | 9.5e-22 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e+ +rq+t+skRr+gi KKA ELSvLCd+++++++fs+tgk XP_020697713.1 9 KRLESMNRRQITYSKRRAGIAKKATELSVLCDIDILLLMFSPTGK 53 68899**************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MGRVKLTIKR LESMNRRQIT YSKRRAGIAK KATELSVLCD IDILLLMFSP TGKPTICLGE 60 HSKFEDVITK FVQLTPQERT KRKLESLEVL KKTFKKLDHD VNIPDFLGSS NQTIEELSSH 120 MLNLRSQLSE MQRRLSYWTD PNNVDSIEQI TQMEHTLLEA INRIQMQKMY LTNQPFQLDY 180 SVSQCHELAC GFEQRATTFK YAMAASW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 7e-72 | M-type_MADS family protein |