PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020697712.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 352aa    MW: 40656 Da    PI: 6.1832
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020697712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.82.2e-21953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    kr e+  +rq+t+skRr+gi KKA ELSvLCd+++++++fs+tgk
  XP_020697712.1  9 KRLESMNRRQITYSKRRAGIAKKATELSVLCDIDILLLMFSPTGK 53
                    68899**************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MGRVKLTIKR LESMNRRQIT YSKRRAGIAK KATELSVLCD IDILLLMFSP TGKPTICLGE  60
HSKFEDVITK FVQLTPQERT KRKLESLEVL KKTFKKLDHD VNIPDFLGSS NQTIEELSSH  120
MLNLRSQLSE MQRRLSYWTD PNNVDSIEQI TQMEHTLLEA INRIQMQKMY LTNQPFQLDY  180
SGEFLNAMNL PVDSSNEQQP SNMQWQHHGD DQNFMFSGAP SLLPQRNNMC STETSLQDYP  240
HYYGIEKQVV CTNNGQEEPL NGMGHNSCLQ LQLGAQHPYQ SYDMNLFANK FQPNGEVSLQ  300
TNQVDFQFNG FRPPVKEFPA ELQNWVDATK SHVCPLIEDP VYTQFQEPKQ VQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.16e-78M-type_MADS family protein