PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697700.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 715aa MW: 81545.1 Da PI: 7.724

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697700.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.4	2.1e-27	142	228	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA ++GFsvrk k+ ++++ +rt+vCs+eg+r+e+k ++++r+r+etr+gC a++k+k++ +g++++tk+ eHnH+ XP_020697700.1 142 EFYNNYAGMAGFSVRKGWLDKRVSDKTTRSRTLVCSREGFRQERKAG-NEAKRPRPETRIGCLARMKIKLMPSGRYRITKFIAEHNHQ 228 6*****************************************999.9************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence
MHMPGESAAI GGSLLLQFED DNEQLEAGGD EGPEDLRRWC KPSMSVCQLE SHSICQCSSK 60 VWFMIAGVFI VELVLGPRRI CAVAQRGRGL YAMHVALHGE SMMIQKTLKK VTYLDASGED 120 AFGADMVPKL GMEFENENKA YEFYNNYAGM AGFSVRKGWL DKRVSDKTTR SRTLVCSREG 180 FRQERKAGNE AKRPRPETRI GCLARMKIKL MPSGRYRITK FIAEHNHQPA PPSSKHLLRS 240 QRVTSEFQST DADLSDDAVA ALRSSGEPTI TRPDVYILPS DYNACLRSKR MKSMQSGDAE 300 ALLKYLQSMQ LQNTAFFYAI QLDEDDKLTN IFWADSKSLE DFNYFGDVVC LDTTYKFNGH 360 CRPFVLFLGV NHHKQITLFG AAFLYDETVE SFKWLLNTFG IAMHGKLPKT ILTDESVAIS 420 SALATVWPET MHRLCVWQIY HSSMKHLSHV FQSSKTFAKD FSRCIYSSED EDQLVLGWRS 480 LLEKYDLRSN EWISKLFECR ENWALAYGRQ TFCADIKSTL QNESLSSELK KYLTPQHDLP 540 SFFKNYEKVV SECRYAELQA DFHASQSFPR IPPSKMLRQA ASMYTPAVFE MFRKEFDVFM 600 DCMLYNSGEY GRVTEYRITV GDNAKEYYVR LDSTDFSVAC SCKKFEFTGI HCGHVIKVLD 660 VRNIKELPFR YYLKRWKRDA KLAIDAEPKS PTVSLASGQV PPDPHQGCQL GQATG

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence

MHMPGESAAI GGSLLLQFED DNEQLEAGGD EGPEDLRRWC KPSMSVCQLE SHSICQCSSK  60
VWFMIAGVFI VELVLGPRRI CAVAQRGRGL YAMHVALHGE SMMIQKTLKK VTYLDASGED  120
AFGADMVPKL GMEFENENKA YEFYNNYAGM AGFSVRKGWL DKRVSDKTTR SRTLVCSREG  180
FRQERKAGNE AKRPRPETRI GCLARMKIKL MPSGRYRITK FIAEHNHQPA PPSSKHLLRS  240
QRVTSEFQST DADLSDDAVA ALRSSGEPTI TRPDVYILPS DYNACLRSKR MKSMQSGDAE  300
ALLKYLQSMQ LQNTAFFYAI QLDEDDKLTN IFWADSKSLE DFNYFGDVVC LDTTYKFNGH  360
CRPFVLFLGV NHHKQITLFG AAFLYDETVE SFKWLLNTFG IAMHGKLPKT ILTDESVAIS  420
SALATVWPET MHRLCVWQIY HSSMKHLSHV FQSSKTFAKD FSRCIYSSED EDQLVLGWRS  480
LLEKYDLRSN EWISKLFECR ENWALAYGRQ TFCADIKSTL QNESLSSELK KYLTPQHDLP  540
SFFKNYEKVV SECRYAELQA DFHASQSFPR IPPSKMLRQA ASMYTPAVFE MFRKEFDVFM  600
DCMLYNSGEY GRVTEYRITV GDNAKEYYVR LDSTDFSVAC SCKKFEFTGI HCGHVIKVLD  660
VRNIKELPFR YYLKRWKRDA KLAIDAEPKS PTVSLASGQV PPDPHQGCQL GQATG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	196	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-121	FAR1 family protein