PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697658.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 333aa MW: 36744.3 Da PI: 8.5921

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697658.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56	6.6e-18	164	218	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_020697658.1 164 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 218 788899***********************************************98 PP
2	HD-ZIP_I/II	126.6	1.1e-40	164	254	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+e+n+rL+ke +eLr +lk XP_020697658.1 164 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLREDNRRLQKELSELR-ALK 254 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MELALSLGEP PAEKIVGERG RPSTKLKLGF CMELGGGRER RGEEDEEDIG GGRNWEMEER 60 GKRRRSVDSP VQLNLLPLVP LPRQEMGFPW STENRNLEAT TRVLDVNQVP SAEDGAAVSS 120 SPNSTVSSFH VDFAGGVGMS AAAAADLERT SSRASDEEDN GGSRKKLRLS KEQSAFLEES 180 FKEHSTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK RCCETLREDN 240 RRLQKELSEL RALKTSQPFY MQLPATTLSM CPSCERVSSN SSSAAAANQT STAAPTASSI 300 PPTGSDKPPV PFVTSLFPKP RFYPFARQPS AAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	169	SRKKLRL
2	213	221	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	5e-63	HD-ZIP family protein