PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020697404.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 317aa    MW: 35663.4 Da    PI: 8.8799
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020697404.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.2e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+l+ +++++G+g +W + ++++g++R++k+c++rw++yl
   XP_020697404.2 14 KGPWSPEEDERLKSYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding39.51.3e-1270111346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++ eEd ++  +    G++ W+ Ia++++ gRt++++k++w++
   XP_020697404.2  70 GFSDEEDSIICSLYIAIGSR-WSIIAAHLP-GRTDNDIKNHWNT 111
                      699*****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MGRAPCCDKA NVKKGPWSPE EDERLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSDEEDSIIC SLYIAIGSRW SIIAAHLPGR TDNDIKNHWN TKLKTRLLGK  120
QRKNQQNRRS CILKQAMMKK KADSQSGSAS NEANNGWLKQ PAISTIPFHF TDFASNDHYS  180
QGSISKLQMK LSDVRFPCCG NGSHQAQVAP SLKIPQAIYD ETPVNSTMAY SIHENIVNDG  240
SPFRNVGPEF FEQGLNFTNN NSLMKLEGFD FFYGMSSLIN ESVNVSESFI WSEMNSFTLP  300
VIPMASGYEE PMRIGEQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.12e-80MYB family protein