PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020697379.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 216aa    MW: 23905.6 Da    PI: 8.7749
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020697379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.21.2e-192064145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    k+i n+  rqv f+kRr+g++KKA+ELS+LC++e a++ fs+ gk
  XP_020697379.1 20 KKIANEAARQVAFTKRRQGVMKKASELSILCGVEFAIVAFSPAGK 64
                    6899**************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
METLNKKKRS SRGRQKIDIK KIANEAARQV AFTKRRQGVM KKASELSILC GVEFAIVAFS  60
PAGKPFSLGH PSVESIVARF LDHGNVAAGQ AQQPAEWQLN LQCAEMEQRV EEARERRAVA  120
EDRLRAATVG VGELMRRALK MEEMEGMSLE ELEAARIVMD DVRMRVEVRQ HELLFAAAVA  180
ARPISTALST VGVDEVKQLE EGMMVSHPFT SIGGSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-29M-type_MADS family protein